Analysis of interatomic Contacts of Structural Units in PDB entry:
9W5Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9W5Y entry

There are 2 chains in PDB entry 9W5Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 975THR 1129
B
 GLN 975THR 1129
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 9W5Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
996 1001Right-handed 310
Helix 2
AA2
A
1089 1096Right-handed alpha
Helix 3
AA3
A
1104 1111Right-handed alpha
Helix 4
AA4
A
1125 1128Right-handed 310
Helix 5
AA5
B
996 1001Right-handed 310
Helix 6
AA6
B
1089 1096Right-handed alpha
Helix 7
AA7
B
1104 1111Right-handed alpha
Helix 8
AA8
B
1125 1128Right-handed 310
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There are 7 sheets in PDB entry 9W5Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1055 1057first strand
Strand 2
A
1035 1039anti-parallel
Strand 3
A
1097 1103anti-parallel
Strand 4
A
1116 1124anti-parallel
Strand 5
A
979 988anti-parallel
Strand 6
A
1005 1011anti-parallel
Strand 7
A
1014 1020anti-parallel
Strand 8
A
1081 1087anti-parallel
Strand 9
A
1059 1063anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1024 1026first strand
Strand 2
A
1029 1031anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1044 1045first strand
Strand 2
A
1051 1052anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1073 1074first strand
Strand 2
A
1077 1078anti-parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1055 1057first strand
Strand 2
B
1035 1039anti-parallel
Strand 3
B
1097 1103anti-parallel
Strand 4
B
1116 1124anti-parallel
Strand 5
B
979 988anti-parallel
Strand 6
B
1005 1011anti-parallel
Strand 7
B
1014 1020anti-parallel
Strand 8
B
1081 1087anti-parallel
Strand 9
B
1059 1063anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1024 1026first strand
Strand 2
B
1029 1031anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1044 1045first strand
Strand 2
B
1051 1052anti-parallel
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