Analysis of interatomic Contacts of Structural Units in PDB entry:
9W5Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9W5Z entry

There are 2 chains in PDB entry 9W5Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 298LYS 501
B
 LEU 297LYS 501
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 21 helices in PDB entry 9W5Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
298 316Right-handed alpha
Helix 2
AA2
A
318 321Right-handed 310
Helix 3
AA3
A
322 336Right-handed alpha
Helix 4
AA4
A
337 339Right-handed 310
Helix 5
AA5
A
341 361Right-handed alpha
Helix 6
AA6
A
367 369Right-handed 310
Helix 7
AA7
A
389 395Right-handed 310
Helix 8
AA8
A
418 420Right-handed 310
Helix 9
AA9
A
474 476Right-handed 310
Helix 10
AB1
A
478 482Right-handed 310
Helix 11
AB2
A
484 488Right-handed 310
Helix 12
AB3
B
299 316Right-handed alpha
Helix 13
AB4
B
318 321Right-handed 310
Helix 14
AB5
B
322 336Right-handed alpha
Helix 15
AB6
B
337 339Right-handed 310
Helix 16
AB7
B
341 361Right-handed alpha
Helix 17
AB8
B
389 395Right-handed 310
Helix 18
AB9
B
418 420Right-handed 310
Helix 19
AC1
B
474 476Right-handed 310
Helix 20
AC2
B
478 482Right-handed 310
Helix 21
AC3
B
484 488Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 9W5Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
364 365first strand
Strand 2
A
498 499anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
422 427first strand
Strand 2
A
466 472anti-parallel
Strand 3
A
489 495anti-parallel
Strand 4
A
372 381anti-parallel
Strand 5
A
398 403anti-parallel
Strand 6
A
409 415anti-parallel
Strand 7
A
450 459anti-parallel
Strand 8
A
437 444anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
364 365first strand
Strand 2
B
498 499anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
422 427first strand
Strand 2
B
466 472anti-parallel
Strand 3
B
489 495anti-parallel
Strand 4
B
372 381anti-parallel
Strand 5
B
398 403anti-parallel
Strand 6
B
409 415anti-parallel
Strand 7
B
450 459anti-parallel
Strand 8
B
437 444anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il