Analysis of interatomic Contacts of Structural Units in PDB entry:
9W60


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9W60 entry

There are 2 chains in PDB entry 9W60 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 389
B
 MET 1LYS 389
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 9W60. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 23Right-handed alpha
Helix 2
AA2
A
24 26Right-handed 310
Helix 3
AA3
A
27 34Right-handed alpha
Helix 4
AA4
A
38 47Right-handed alpha
Helix 5
AA5
A
56 60Right-handed 310
Helix 6
AA6
A
65 78Right-handed alpha
Helix 7
AA7
A
80 94Right-handed alpha
Helix 8
AA8
A
94 102Right-handed alpha
Helix 9
AA9
A
103 116Right-handed alpha
Helix 10
AB1
A
235 273Right-handed alpha
Helix 11
AB2
A
279 282Right-handed 310
Helix 12
AB3
A
283 316Right-handed alpha
Helix 13
AB4
A
322 349Right-handed alpha
Helix 14
AB5
A
350 354Right-handed 310
Helix 15
AB6
A
358 370Right-handed alpha
Helix 16
AB7
A
375 389Right-handed alpha
Helix 17
AB8
B
8 24Right-handed alpha
Helix 18
AB9
B
27 34Right-handed alpha
Helix 19
AC1
B
38 48Right-handed alpha
Helix 20
AC2
B
56 60Right-handed 310
Helix 21
AC3
B
65 78Right-handed alpha
Helix 22
AC4
B
80 94Right-handed alpha
Helix 23
AC5
B
94 102Right-handed alpha
Helix 24
AC6
B
103 117Right-handed alpha
Helix 25
AC7
B
159 163Right-handed 310
Helix 26
AC8
B
235 273Right-handed alpha
Helix 27
AC9
B
283 316Right-handed alpha
Helix 28
AD1
B
322 348Right-handed alpha
Helix 29
AD2
B
349 353Right-handed 310
Helix 30
AD3
B
358 370Right-handed alpha
Helix 31
AD4
B
375 388Right-handed alpha
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There are 5 sheets in PDB entry 9W60. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 144first strand
Strand 2
A
147 158anti-parallel
Strand 3
A
214 225anti-parallel
Strand 4
A
198 200anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 176first strand
Strand 2
A
182 192anti-parallel
Strand 3
A
229 230anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
121 124first strand
Strand 2
B
165 176parallel
Strand 3
B
182 192anti-parallel
Strand 4
B
229 230anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
140 144first strand
Strand 2
B
147 157anti-parallel
Strand 3
B
215 225anti-parallel
Strand 4
B
198 200anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
274 275first strand
Strand 2
B
278 279anti-parallel
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