Analysis of interatomic Contacts of Structural Units in PDB entry:
9W62


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9W62 entry

There is 1 chain in PDB entry 9W62 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 VAL 58THR 651
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 21 helices in PDB entry 9W62. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
60 75Right-handed alpha
Helix 2
AA2
B
80 116Right-handed alpha
Helix 3
AA3
B
118 167Right-handed alpha
Helix 4
AA4
B
170 178Right-handed alpha
Helix 5
AA5
B
184 225Right-handed alpha
Helix 6
AA6
B
227 248Right-handed alpha
Helix 7
AA7
B
249 275Right-handed alpha
Helix 8
AA8
B
275 283Right-handed alpha
Helix 9
AA9
B
284 322Right-handed alpha
Helix 10
AB1
B
322 334Right-handed alpha
Helix 11
AB2
B
334 339Right-handed alpha
Helix 12
AB3
B
349 404Right-handed alpha
Helix 13
AB4
B
478 487Right-handed alpha
Helix 14
AB5
B
501 503Right-handed 310
Helix 15
AB6
B
518 523Right-handed alpha
Helix 16
AB7
B
528 536Right-handed alpha
Helix 17
AB8
B
538 549Right-handed alpha
Helix 18
AB9
B
551 558Right-handed alpha
Helix 19
AC1
B
572 588Right-handed alpha
Helix 20
AC2
B
602 617Right-handed alpha
Helix 21
AC3
B
626 633Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 9W62. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
432 435first strand
Strand 2
B
496 499parallel
Strand 3
B
439 443anti-parallel
Strand 4
B
460 464anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
447 448first strand
Strand 2
B
454 456anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
470 472first strand
Strand 2
B
635 639parallel
Strand 3
B
645 649anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
505 508first strand
Strand 2
B
591 595parallel
Strand 3
B
619 623parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il