Analysis of interatomic Contacts of Structural Units in PDB entry:
9W6U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9W6U entry

There are 5 chains in PDB entry 9W6U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 14ALA 292
B
 GLN 1ASP 224
C
 GLN 1CYS 213
D
 ASP 1GLU 213
E
 GLN 1PRO 230
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 9W6U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
28 32Right-handed 310
Helix 2
AA2
B
87 91Right-handed 310
Helix 3
AA3
B
163 165Right-handed 310
Helix 4
AA4
B
193 199Right-handed alpha
Helix 5
AA5
C
25 32Right-handed alpha
Helix 6
AA6
C
81 85Right-handed 310
Helix 7
AA7
C
123 129Right-handed alpha
Helix 8
AA8
C
183 190Right-handed alpha
Helix 9
AA9
D
121 128Right-handed alpha
Helix 10
AB1
D
183 189Right-handed alpha
Helix 11
AB2
E
87 91Right-handed 310
Helix 12
AB3
E
144 151Right-handed alpha
Helix 13
AB4
E
173 175Right-handed 310
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There are 25 sheets in PDB entry 9W6U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 30first strand
Strand 2
A
61 66anti-parallel
Strand 3
A
264 269anti-parallel
Strand 4
A
90 94anti-parallel
Strand 5
A
188 197anti-parallel
Strand 6
A
200 209anti-parallel
Strand 7
A
224 230anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 55first strand
Strand 2
A
271 279anti-parallel
Strand 3
A
285 290anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 79first strand
Strand 2
A
68 71anti-parallel
Strand 3
E
108 110anti-parallel
Strand 4
E
102 103anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 85first strand
Strand 2
A
237 245anti-parallel
Strand 3
A
141 146parallel
Strand 4
A
151 154anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 85first strand
Strand 2
A
237 245anti-parallel
Strand 3
A
101 107anti-parallel
Strand 4
A
111 121anti-parallel
Strand 5
A
126 135anti-parallel
Strand 6
A
160 172anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 5first strand
Strand 2
B
19 25anti-parallel
Strand 3
B
78 82anti-parallel
Strand 4
B
72 73anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 12first strand
Strand 2
B
114 118parallel
Strand 3
B
92 99anti-parallel
Strand 4
B
33 39anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 51first strand
Strand 2
B
58 59anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 131first strand
Strand 2
B
142 152anti-parallel
Strand 3
B
183 192anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
157 161first strand
Strand 2
B
202 207anti-parallel
Strand 3
B
212 217anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
9 12first strand
Strand 2
C
103 107parallel
Strand 3
C
87 93anti-parallel
Strand 4
C
35 40anti-parallel
Strand 5
C
47 50anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
9 12first strand
Strand 2
C
103 107parallel
Strand 3
C
87 93anti-parallel
Strand 4
C
97 99anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
18 22first strand
Strand 2
C
72 77anti-parallel
Strand 3
C
65 69anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
116 120first strand
Strand 2
C
132 139anti-parallel
Strand 3
C
173 182anti-parallel
Strand 4
C
167 169anti-parallel
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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
147 150first strand
Strand 2
C
195 199anti-parallel
Strand 3
C
202 204anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
4 7first strand
Strand 2
D
19 25anti-parallel
Strand 3
D
70 75anti-parallel
Strand 4
D
62 67anti-parallel
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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 13first strand
Strand 2
D
102 106parallel
Strand 3
D
85 90anti-parallel
Strand 4
D
33 38anti-parallel
Strand 5
D
45 49anti-parallel
Strand 6
D
53 54anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
114 118first strand
Strand 2
D
129 139anti-parallel
Strand 3
D
173 182anti-parallel
Strand 4
D
159 163anti-parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
153 154first strand
Strand 2
D
145 150anti-parallel
Strand 3
D
191 197anti-parallel
Strand 4
D
205 210anti-parallel
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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
3 7first strand
Strand 2
E
17 25anti-parallel
Strand 3
E
78 84anti-parallel
Strand 4
E
68 73anti-parallel
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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
10 12first strand
Strand 2
E
124 128parallel
Strand 3
E
92 99anti-parallel
Strand 4
E
34 39anti-parallel
Strand 5
E
45 51anti-parallel
Strand 6
E
58 60anti-parallel
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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
10 12first strand
Strand 2
E
124 128parallel
Strand 3
E
92 99anti-parallel
Strand 4
E
117 120anti-parallel
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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
137 141first strand
Strand 2
E
152 162anti-parallel
Strand 3
E
193 202anti-parallel
Strand 4
E
180 182anti-parallel
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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
137 141first strand
Strand 2
E
152 162anti-parallel
Strand 3
E
193 202anti-parallel
Strand 4
E
186 187anti-parallel
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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
167 171first strand
Strand 2
E
211 217anti-parallel
Strand 3
E
222 228anti-parallel
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