Analysis of interatomic Contacts of Structural Units in PDB entry:
9W77

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9W77 entry

There are 4 chains in PDB entry 9W77 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	PRO 311	PHE 480
C	SER 19	LEU 725
A	SER 19	LEU 725
D	PRO 311	PHE 480

There are 80 helices in PDB entry 9W77. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	312	317	Right-handed alpha
Helix 2	AA2	B	340	345	Right-handed alpha
Helix 3	AA3	B	378	382	Right-handed 310
Helix 4	AA4	B	390	395	Right-handed alpha
Helix 5	AA5	C	20	53	Right-handed alpha
Helix 6	AA6	C	55	81	Right-handed alpha
Helix 7	AA7	C	82	83	Right-handed 310
Helix 8	AA8	C	84	88	Right-handed 310
Helix 9	AA9	C	90	103	Right-handed alpha
Helix 10	AB1	C	109	130	Right-handed alpha
Helix 11	AB2	C	147	155	Right-handed alpha
Helix 12	AB3	C	157	168	Right-handed alpha
Helix 13	AB4	C	172	193	Right-handed alpha
Helix 14	AB5	C	198	204	Right-handed alpha
Helix 15	AB6	C	218	248	Right-handed alpha
Helix 16	AB7	C	275	277	Right-handed 310
Helix 17	AB8	C	278	283	Right-handed alpha
Helix 18	AB9	C	293	299	Right-handed alpha
Helix 19	AC1	C	303	318	Right-handed alpha
Helix 20	AC2	C	324	331	Right-handed alpha
Helix 21	AC3	C	365	386	Right-handed alpha
Helix 22	AC4	C	387	388	Right-handed 310
Helix 23	AC5	C	389	393	Right-handed 310
Helix 24	AC6	C	399	413	Right-handed alpha
Helix 25	AC7	C	414	422	Right-handed alpha
Helix 26	AC8	C	431	447	Right-handed alpha
Helix 27	AC9	C	449	466	Right-handed alpha
Helix 28	AD1	C	469	471	Right-handed 310
Helix 29	AD2	C	472	484	Right-handed alpha
Helix 30	AD3	C	499	502	Right-handed 310
Helix 31	AD4	C	503	508	Right-handed alpha
Helix 32	AD5	C	512	533	Right-handed alpha
Helix 33	AD6	C	538	542	Right-handed 310
Helix 34	AD7	C	547	560	Right-handed alpha
Helix 35	AD8	C	565	575	Right-handed alpha
Helix 36	AD9	C	581	588	Right-handed alpha
Helix 37	AE1	C	588	599	Right-handed alpha
Helix 38	AE2	C	636	658	Right-handed alpha
Helix 39	AE3	C	666	668	Right-handed 310
Helix 40	AE4	C	696	707	Right-handed alpha
Helix 41	AE5	C	707	714	Right-handed alpha
Helix 42	AE6	A	20	52	Right-handed alpha
Helix 43	AE7	A	58	81	Right-handed alpha
Helix 44	AE8	A	90	103	Right-handed alpha
Helix 45	AE9	A	109	130	Right-handed alpha
Helix 46	AF1	A	147	155	Right-handed alpha
Helix 47	AF2	A	157	168	Right-handed alpha
Helix 48	AF3	A	172	193	Right-handed alpha
Helix 49	AF4	A	198	204	Right-handed alpha
Helix 50	AF5	A	218	249	Right-handed alpha
Helix 51	AF6	A	275	277	Right-handed 310
Helix 52	AF7	A	278	283	Right-handed alpha
Helix 53	AF8	A	293	299	Right-handed alpha
Helix 54	AF9	A	303	318	Right-handed alpha
Helix 55	AG1	A	324	331	Right-handed alpha
Helix 56	AG2	A	365	386	Right-handed alpha
Helix 57	AG3	A	387	388	Right-handed 310
Helix 58	AG4	A	389	393	Right-handed 310
Helix 59	AG5	A	399	413	Right-handed alpha
Helix 60	AG6	A	414	421	Right-handed alpha
Helix 61	AG7	A	431	447	Right-handed alpha
Helix 62	AG8	A	449	466	Right-handed alpha
Helix 63	AG9	A	469	471	Right-handed 310
Helix 64	AH1	A	472	484	Right-handed alpha
Helix 65	AH2	A	499	502	Right-handed 310
Helix 66	AH3	A	503	508	Right-handed alpha
Helix 67	AH4	A	512	533	Right-handed alpha
Helix 68	AH5	A	538	542	Right-handed 310
Helix 69	AH6	A	547	560	Right-handed alpha
Helix 70	AH7	A	565	575	Right-handed alpha
Helix 71	AH8	A	581	588	Right-handed alpha
Helix 72	AH9	A	588	599	Right-handed alpha
Helix 73	AI1	A	636	658	Right-handed alpha
Helix 74	AI2	A	666	668	Right-handed 310
Helix 75	AI3	A	696	707	Right-handed alpha
Helix 76	AI4	A	707	714	Right-handed alpha
Helix 77	AI5	D	312	317	Right-handed alpha
Helix 78	AI6	D	340	345	Right-handed alpha
Helix 79	AI7	D	381	385	Right-handed 310
Helix 80	AI8	D	412	417	Right-handed alpha

There are 16 sheets in PDB entry 9W77. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	350	352	first strand
Strand 2	B	406	411	anti-parallel
Strand 3	B	473	479	anti-parallel
Strand 4	B	370	371	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	426	428	first strand
Strand 2	B	457	459	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	446	449	first strand
Strand 2	B	452	455	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	131	133	first strand
Strand 2	C	141	143	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	262	263	first strand
Strand 2	C	487	488	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	347	352	first strand
Strand 2	C	355	359	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	618	621	first strand
Strand 2	C	680	687	anti-parallel
Strand 3	C	670	673	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	618	621	first strand
Strand 2	C	680	687	anti-parallel
Strand 3	C	690	694	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	131	133	first strand
Strand 2	A	141	143	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	262	263	first strand
Strand 2	A	487	488	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	347	352	first strand
Strand 2	A	355	359	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	618	621	first strand
Strand 2	A	680	687	anti-parallel
Strand 3	A	670	673	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	618	621	first strand
Strand 2	A	680	687	anti-parallel
Strand 3	A	690	694	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	353	354	first strand
Strand 2	D	405	411	anti-parallel
Strand 3	D	473	479	anti-parallel
Strand 4	D	370	374	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	426	428	first strand
Strand 2	D	457	459	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	446	449	first strand
Strand 2	D	452	455	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9W77

Analysis of interatomic Contacts of Structural Units in PDB entry:
9W77