Analysis of interatomic Contacts of Structural Units in PDB entry:
9W78


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9W78 entry

There are 2 chains in PDB entry 9W78 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 PRO 311PHE 480
C
 SER 19LEU 725
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 9W78. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
D
312 317Right-handed alpha
Helix 2
AA2
D
339 345Right-handed alpha
Helix 3
AA3
D
377 385Right-handed 310
Helix 4
AA4
D
390 395Right-handed alpha
Helix 5
AA5
D
412 417Right-handed alpha
Helix 6
AA6
D
467 471Right-handed 310
Helix 7
AA7
C
20 52Right-handed alpha
Helix 8
AA8
C
55 81Right-handed alpha
Helix 9
AA9
C
82 83Right-handed 310
Helix 10
AB1
C
84 88Right-handed 310
Helix 11
AB2
C
90 103Right-handed alpha
Helix 12
AB3
C
109 130Right-handed alpha
Helix 13
AB4
C
147 155Right-handed alpha
Helix 14
AB5
C
157 168Right-handed alpha
Helix 15
AB6
C
172 194Right-handed alpha
Helix 16
AB7
C
198 205Right-handed alpha
Helix 17
AB8
C
206 208Right-handed 310
Helix 18
AB9
C
218 251Right-handed alpha
Helix 19
AC1
C
275 277Right-handed 310
Helix 20
AC2
C
278 283Right-handed alpha
Helix 21
AC3
C
293 299Right-handed alpha
Helix 22
AC4
C
300 302Right-handed 310
Helix 23
AC5
C
303 318Right-handed alpha
Helix 24
AC6
C
324 331Right-handed alpha
Helix 25
AC7
C
365 386Right-handed alpha
Helix 26
AC8
C
387 388Right-handed 310
Helix 27
AC9
C
389 393Right-handed 310
Helix 28
AD1
C
399 413Right-handed alpha
Helix 29
AD2
C
414 421Right-handed alpha
Helix 30
AD3
C
431 447Right-handed alpha
Helix 31
AD4
C
449 466Right-handed alpha
Helix 32
AD5
C
469 471Right-handed 310
Helix 33
AD6
C
472 484Right-handed alpha
Helix 34
AD7
C
499 502Right-handed 310
Helix 35
AD8
C
503 508Right-handed alpha
Helix 36
AD9
C
512 533Right-handed alpha
Helix 37
AE1
C
538 542Right-handed 310
Helix 38
AE2
C
547 560Right-handed alpha
Helix 39
AE3
C
565 575Right-handed alpha
Helix 40
AE4
C
581 588Right-handed alpha
Helix 41
AE5
C
588 599Right-handed alpha
Helix 42
AE6
C
636 658Right-handed alpha
Helix 43
AE7
C
666 668Right-handed 310
Helix 44
AE8
C
696 707Right-handed alpha
Helix 45
AE9
C
707 714Right-handed alpha
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There are 8 sheets in PDB entry 9W78. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
330 332first strand
Strand 2
D
369 371anti-parallel
Strand 3
D
473 479anti-parallel
Strand 4
D
407 411anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
426 428first strand
Strand 2
D
457 459anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
446 449first strand
Strand 2
D
452 455anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
131 133first strand
Strand 2
C
141 143anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
262 263first strand
Strand 2
C
487 488parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
347 352first strand
Strand 2
C
355 359anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
618 621first strand
Strand 2
C
680 687anti-parallel
Strand 3
C
670 673anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
618 621first strand
Strand 2
C
680 687anti-parallel
Strand 3
C
690 694anti-parallel
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