Analysis of interatomic Contacts of Structural Units in PDB entry:
9W7U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9W7U entry

There are 4 chains in PDB entry 9W7U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASP 1368
B
 G 2 C 35
C
 G 1 C 15
D
 G 1 U 98
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 9W7U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
59 94Right-handed alpha
Helix 2
AA2
A
96 103Right-handed alpha
Helix 3
AA3
A
121 132Right-handed alpha
Helix 4
AA4
A
134 145Right-handed alpha
Helix 5
AA5
A
150 164Right-handed alpha
Helix 6
AA6
A
295 306Right-handed alpha
Helix 7
AA7
A
315 343Right-handed alpha
Helix 8
AA8
A
346 353Right-handed alpha
Helix 9
AA9
A
358 364Right-handed alpha
Helix 10
AB1
A
368 382Right-handed alpha
Helix 11
AB2
A
386 395Right-handed alpha
Helix 12
AB3
A
404 410Right-handed 310
Helix 13
AB4
A
411 427Right-handed alpha
Helix 14
AB5
A
430 436Right-handed alpha
Helix 15
AB6
A
436 446Right-handed alpha
Helix 16
AB7
A
477 482Right-handed alpha
Helix 17
AB8
A
483 494Right-handed alpha
Helix 18
AB9
A
512 526Right-handed alpha
Helix 19
AC1
A
541 552Right-handed alpha
Helix 20
AC2
A
560 568Right-handed alpha
Helix 21
AC3
A
591 602Right-handed alpha
Helix 22
AC4
A
603 609Right-handed alpha
Helix 23
AC5
A
612 626Right-handed alpha
Helix 24
AC6
A
628 637Right-handed alpha
Helix 25
AC7
A
638 640Right-handed 310
Helix 26
AC8
A
644 654Right-handed alpha
Helix 27
AC9
A
663 669Right-handed alpha
Helix 28
AD1
A
678 685Right-handed alpha
Helix 29
AD2
A
692 698Right-handed alpha
Helix 30
AD3
A
703 712Right-handed alpha
Helix 31
AD4
A
719 726Right-handed alpha
Helix 32
AD5
A
730 751Right-handed alpha
Helix 33
AD6
A
769 778Right-handed alpha
Helix 34
AD7
A
779 792Right-handed alpha
Helix 35
AD8
A
794 799Right-handed alpha
Helix 36
AD9
A
802 807Right-handed alpha
Helix 37
AE1
A
808 817Right-handed alpha
Helix 38
AE2
A
829 833Right-handed 310
Helix 39
AE3
A
859 866Right-handed alpha
Helix 40
AE4
A
872 890Right-handed alpha
Helix 41
AE5
A
893 901Right-handed alpha
Helix 42
AE6
A
901 906Right-handed alpha
Helix 43
AE7
A
909 914Right-handed alpha
Helix 44
AE8
A
917 925Right-handed alpha
Helix 45
AE9
A
926 940Right-handed alpha
Helix 46
AF1
A
960 970Right-handed alpha
Helix 47
AF2
A
980 999Right-handed alpha
Helix 48
AF3
A
1077 1088Right-handed alpha
Helix 49
AF4
A
1127 1132Right-handed alpha
Helix 50
AF5
A
1170 1177Right-handed alpha
Helix 51
AF6
A
1177 1185Right-handed alpha
Helix 52
AF7
A
1191 1195Right-handed 310
Helix 53
AF8
A
1207 1209Right-handed 310
Helix 54
AF9
A
1229 1241Right-handed alpha
Helix 55
AG1
A
1248 1262Right-handed alpha
Helix 56
AG2
A
1264 1281Right-handed alpha
Helix 57
AG3
A
1283 1297Right-handed alpha
Helix 58
AG4
A
1301 1313Right-handed alpha
Helix 59
AG5
A
1314 1316Right-handed 310
Helix 60
AG6
A
1339 1344Right-handed 310
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There are 8 sheets in PDB entry 9W7U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
954 959first strand
Strand 2
A
758 763parallel
Strand 3
A
5 11parallel
Strand 4
A
15 22anti-parallel
Strand 5
A
48 52anti-parallel
Strand 6
A
1093 1096parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 46first strand
Strand 2
A
29 36anti-parallel
Strand 3
A
1357 1361parallel
Strand 4
A
1346 1350anti-parallel
Strand 5
A
1202 1205anti-parallel
Strand 6
A
1211 1214anti-parallel
Strand 7
A
1220 1222anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
538 539first strand
Strand 2
A
528 531anti-parallel
Strand 3
A
578 581anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
837 840first strand
Strand 2
A
855 858anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1120 1121first strand
Strand 2
A
1133 1134anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1156 1167first strand
Strand 2
A
1139 1151anti-parallel
Strand 3
A
1187 1188anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1156 1167first strand
Strand 2
A
1139 1151anti-parallel
Strand 3
A
1197 1198anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1324 1326first strand
Strand 2
A
1329 1331anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il