Analysis of interatomic Contacts of Structural Units in PDB entry:
9W96

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9W96 entry

There are 4 chains in PDB entry 9W96 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 3	VAL 328
B	GLN 2	VAL 328
C	GLN 2	VAL 328
D	GLN 2	VAL 328

There are 72 helices in PDB entry 9W96. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	22	30	Right-handed alpha
Helix 2	AA2	A	34	41	Right-handed alpha
Helix 3	AA3	A	53	70	Right-handed alpha
Helix 4	AA4	A	72	74	Right-handed 310
Helix 5	AA5	A	93	102	Right-handed alpha
Helix 6	AA6	A	113	115	Right-handed 310
Helix 7	AA7	A	116	133	Right-handed alpha
Helix 8	AA8	A	145	148	Right-handed 310
Helix 9	AA9	A	152	157	Right-handed alpha
Helix 10	AB1	A	187	191	Right-handed 310
Helix 11	AB2	A	210	213	Right-handed 310
Helix 12	AB3	A	219	242	Right-handed alpha
Helix 13	AB4	A	245	249	Right-handed 310
Helix 14	AB5	A	258	270	Right-handed alpha
Helix 15	AB6	A	272	276	Right-handed 310
Helix 16	AB7	A	279	284	Right-handed alpha
Helix 17	AB8	A	286	288	Right-handed 310
Helix 18	AB9	A	289	302	Right-handed alpha
Helix 19	AC1	B	22	30	Right-handed alpha
Helix 20	AC2	B	34	41	Right-handed alpha
Helix 21	AC3	B	53	70	Right-handed alpha
Helix 22	AC4	B	72	74	Right-handed 310
Helix 23	AC5	B	93	101	Right-handed alpha
Helix 24	AC6	B	113	115	Right-handed 310
Helix 25	AC7	B	116	133	Right-handed alpha
Helix 26	AC8	B	145	148	Right-handed 310
Helix 27	AC9	B	152	157	Right-handed alpha
Helix 28	AD1	B	187	190	Right-handed 310
Helix 29	AD2	B	209	214	Right-handed 310
Helix 30	AD3	B	219	243	Right-handed alpha
Helix 31	AD4	B	245	249	Right-handed 310
Helix 32	AD5	B	258	270	Right-handed alpha
Helix 33	AD6	B	272	276	Right-handed 310
Helix 34	AD7	B	279	284	Right-handed alpha
Helix 35	AD8	B	286	288	Right-handed 310
Helix 36	AD9	B	289	302	Right-handed alpha
Helix 37	AE1	C	22	30	Right-handed alpha
Helix 38	AE2	C	34	41	Right-handed alpha
Helix 39	AE3	C	53	69	Right-handed alpha
Helix 40	AE4	C	72	74	Right-handed 310
Helix 41	AE5	C	93	101	Right-handed alpha
Helix 42	AE6	C	113	115	Right-handed 310
Helix 43	AE7	C	116	133	Right-handed alpha
Helix 44	AE8	C	145	148	Right-handed 310
Helix 45	AE9	C	152	157	Right-handed alpha
Helix 46	AF1	C	187	190	Right-handed 310
Helix 47	AF2	C	209	214	Right-handed 310
Helix 48	AF3	C	219	242	Right-handed alpha
Helix 49	AF4	C	245	249	Right-handed 310
Helix 50	AF5	C	258	270	Right-handed alpha
Helix 51	AF6	C	272	276	Right-handed 310
Helix 52	AF7	C	279	284	Right-handed alpha
Helix 53	AF8	C	286	288	Right-handed 310
Helix 54	AF9	C	289	302	Right-handed alpha
Helix 55	AG1	D	22	30	Right-handed alpha
Helix 56	AG2	D	34	41	Right-handed alpha
Helix 57	AG3	D	53	70	Right-handed alpha
Helix 58	AG4	D	72	74	Right-handed 310
Helix 59	AG5	D	92	101	Right-handed alpha
Helix 60	AG6	D	113	115	Right-handed 310
Helix 61	AG7	D	116	133	Right-handed alpha
Helix 62	AG8	D	145	148	Right-handed 310
Helix 63	AG9	D	152	157	Right-handed alpha
Helix 64	AH1	D	187	191	Right-handed 310
Helix 65	AH2	D	209	213	Right-handed 310
Helix 66	AH3	D	219	243	Right-handed alpha
Helix 67	AH4	D	245	249	Right-handed 310
Helix 68	AH5	D	258	270	Right-handed alpha
Helix 69	AH6	D	272	276	Right-handed 310
Helix 70	AH7	D	279	284	Right-handed alpha
Helix 71	AH8	D	286	288	Right-handed 310
Helix 72	AH9	D	289	302	Right-handed alpha

There are 14 sheets in PDB entry 9W96. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	14	first strand
Strand 2	A	161	171	anti-parallel
Strand 3	A	135	143	anti-parallel
Strand 4	A	76	82	parallel
Strand 5	A	107	112	parallel
Strand 6	B	107	112	anti-parallel
Strand 7	B	76	82	parallel
Strand 8	B	135	143	parallel
Strand 9	B	161	171	anti-parallel
Strand 10	B	5	14	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	21	first strand
Strand 2	A	44	47	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	177	185	first strand
Strand 2	A	320	327	anti-parallel
Strand 3	A	309	316	anti-parallel
Strand 4	A	251	254	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	193	195	first strand
Strand 2	A	215	217	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	21	first strand
Strand 2	B	44	47	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	177	185	first strand
Strand 2	B	320	327	anti-parallel
Strand 3	B	309	316	anti-parallel
Strand 4	B	251	254	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	193	194	first strand
Strand 2	B	216	217	anti-parallel

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There are 10 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	14	first strand
Strand 2	C	161	171	anti-parallel
Strand 3	C	135	143	anti-parallel
Strand 4	C	76	82	parallel
Strand 5	C	107	112	parallel
Strand 6	D	107	112	anti-parallel
Strand 7	D	76	82	parallel
Strand 8	D	135	143	parallel
Strand 9	D	161	171	anti-parallel
Strand 10	D	5	14	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	18	21	first strand
Strand 2	C	44	47	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	177	185	first strand
Strand 2	C	320	327	anti-parallel
Strand 3	C	309	316	anti-parallel
Strand 4	C	251	254	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	193	194	first strand
Strand 2	C	216	217	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	18	21	first strand
Strand 2	D	44	47	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	177	185	first strand
Strand 2	D	320	327	anti-parallel
Strand 3	D	309	316	anti-parallel
Strand 4	D	251	254	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	193	195	first strand
Strand 2	D	215	217	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9W96

Analysis of interatomic Contacts of Structural Units in PDB entry:
9W96