Analysis of interatomic Contacts of Structural Units in PDB entry:
9W9E

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9W9E entry

There are 4 chains in PDB entry 9W9E (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 86	ASP 947
B	ASP 86	ASP 947
C	ASP 86	ASP 947
D	ASP 86	ASP 947

There are136 helices in PDB entry 9W9E. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	86	102	Right-handed alpha
Helix 2	AA2	A	104	110	Right-handed alpha
Helix 3	AA3	A	182	191	Right-handed alpha
Helix 4	AA4	A	239	245	Right-handed alpha
Helix 5	AA5	A	261	268	Right-handed alpha
Helix 6	AA6	A	268	275	Right-handed alpha
Helix 7	AA7	A	275	299	Right-handed alpha
Helix 8	AA8	A	336	346	Right-handed alpha
Helix 9	AA9	A	384	406	Right-handed alpha
Helix 10	AB1	A	407	418	Right-handed alpha
Helix 11	AB2	A	434	444	Right-handed alpha
Helix 12	AB3	A	461	477	Right-handed alpha
Helix 13	AB4	A	526	538	Right-handed alpha
Helix 14	AB5	A	541	543	Right-handed 310
Helix 15	AB6	A	544	554	Right-handed alpha
Helix 16	AB7	A	565	574	Right-handed alpha
Helix 17	AB8	A	577	581	Right-handed 310
Helix 18	AB9	A	602	606	Right-handed 310
Helix 19	AC1	A	610	616	Right-handed alpha
Helix 20	AC2	A	629	638	Right-handed alpha
Helix 21	AC3	A	639	647	Right-handed 310
Helix 22	AC4	A	681	683	Right-handed 310
Helix 23	AC5	A	684	699	Right-handed alpha
Helix 24	AC6	A	710	720	Right-handed alpha
Helix 25	AC7	A	739	744	Right-handed alpha
Helix 26	AC8	A	744	757	Right-handed alpha
Helix 27	AC9	A	771	789	Right-handed alpha
Helix 28	AD1	A	793	798	Right-handed alpha
Helix 29	AD2	A	804	806	Right-handed 310
Helix 30	AD3	A	849	866	Right-handed alpha
Helix 31	AD4	A	889	901	Right-handed alpha
Helix 32	AD5	A	903	905	Right-handed 310
Helix 33	AD6	A	906	918	Right-handed alpha
Helix 34	AD7	A	934	946	Right-handed alpha
Helix 35	AD8	B	87	102	Right-handed alpha
Helix 36	AD9	B	104	110	Right-handed alpha
Helix 37	AE1	B	182	191	Right-handed alpha
Helix 38	AE2	B	239	245	Right-handed alpha
Helix 39	AE3	B	261	268	Right-handed alpha
Helix 40	AE4	B	268	275	Right-handed alpha
Helix 41	AE5	B	275	299	Right-handed alpha
Helix 42	AE6	B	336	346	Right-handed alpha
Helix 43	AE7	B	384	406	Right-handed alpha
Helix 44	AE8	B	407	418	Right-handed alpha
Helix 45	AE9	B	434	444	Right-handed alpha
Helix 46	AF1	B	461	477	Right-handed alpha
Helix 47	AF2	B	526	538	Right-handed alpha
Helix 48	AF3	B	541	543	Right-handed 310
Helix 49	AF4	B	544	554	Right-handed alpha
Helix 50	AF5	B	565	574	Right-handed alpha
Helix 51	AF6	B	577	581	Right-handed 310
Helix 52	AF7	B	602	606	Right-handed 310
Helix 53	AF8	B	610	616	Right-handed alpha
Helix 54	AF9	B	629	638	Right-handed alpha
Helix 55	AG1	B	639	647	Right-handed 310
Helix 56	AG2	B	681	683	Right-handed 310
Helix 57	AG3	B	684	699	Right-handed alpha
Helix 58	AG4	B	710	720	Right-handed alpha
Helix 59	AG5	B	739	744	Right-handed alpha
Helix 60	AG6	B	744	757	Right-handed alpha
Helix 61	AG7	B	771	789	Right-handed alpha
Helix 62	AG8	B	793	798	Right-handed alpha
Helix 63	AG9	B	804	806	Right-handed 310
Helix 64	AH1	B	849	866	Right-handed alpha
Helix 65	AH2	B	889	901	Right-handed alpha
Helix 66	AH3	B	903	905	Right-handed 310
Helix 67	AH4	B	906	918	Right-handed alpha
Helix 68	AH5	B	934	946	Right-handed alpha
Helix 69	AH6	C	87	102	Right-handed alpha
Helix 70	AH7	C	104	110	Right-handed alpha
Helix 71	AH8	C	182	191	Right-handed alpha
Helix 72	AH9	C	239	245	Right-handed alpha
Helix 73	AI1	C	261	268	Right-handed alpha
Helix 74	AI2	C	268	275	Right-handed alpha
Helix 75	AI3	C	275	299	Right-handed alpha
Helix 76	AI4	C	336	346	Right-handed alpha
Helix 77	AI5	C	384	406	Right-handed alpha
Helix 78	AI6	C	407	418	Right-handed alpha
Helix 79	AI7	C	434	444	Right-handed alpha
Helix 80	AI8	C	461	477	Right-handed alpha
Helix 81	AI9	C	526	538	Right-handed alpha
Helix 82	AJ1	C	541	543	Right-handed 310
Helix 83	AJ2	C	544	554	Right-handed alpha
Helix 84	AJ3	C	565	574	Right-handed alpha
Helix 85	AJ4	C	577	581	Right-handed 310
Helix 86	AJ5	C	602	606	Right-handed 310
Helix 87	AJ6	C	610	616	Right-handed alpha
Helix 88	AJ7	C	629	638	Right-handed alpha
Helix 89	AJ8	C	639	647	Right-handed 310
Helix 90	AJ9	C	681	683	Right-handed 310
Helix 91	AK1	C	684	699	Right-handed alpha
Helix 92	AK2	C	710	720	Right-handed alpha
Helix 93	AK3	C	739	744	Right-handed alpha
Helix 94	AK4	C	744	757	Right-handed alpha
Helix 95	AK5	C	771	789	Right-handed alpha
Helix 96	AK6	C	793	798	Right-handed alpha
Helix 97	AK7	C	804	806	Right-handed 310
Helix 98	AK8	C	849	866	Right-handed alpha
Helix 99	AK9	C	889	901	Right-handed alpha
Helix 100	AL1	C	903	905	Right-handed 310
Helix 101	AL2	C	906	918	Right-handed alpha
Helix 102	AL3	C	934	946	Right-handed alpha
Helix 103	AL4	D	87	102	Right-handed alpha
Helix 104	AL5	D	104	110	Right-handed alpha
Helix 105	AL6	D	182	191	Right-handed alpha
Helix 106	AL7	D	239	245	Right-handed alpha
Helix 107	AL8	D	261	268	Right-handed alpha
Helix 108	AL9	D	268	275	Right-handed alpha
Helix 109	AM1	D	275	299	Right-handed alpha
Helix 110	AM2	D	336	346	Right-handed alpha
Helix 111	AM3	D	384	406	Right-handed alpha
Helix 112	AM4	D	407	418	Right-handed alpha
Helix 113	AM5	D	434	444	Right-handed alpha
Helix 114	AM6	D	461	477	Right-handed alpha
Helix 115	AM7	D	526	538	Right-handed alpha
Helix 116	AM8	D	541	543	Right-handed 310
Helix 117	AM9	D	544	554	Right-handed alpha
Helix 118	AN1	D	565	574	Right-handed alpha
Helix 119	AN2	D	577	581	Right-handed 310
Helix 120	AN3	D	602	606	Right-handed 310
Helix 121	AN4	D	610	616	Right-handed alpha
Helix 122	AN5	D	629	638	Right-handed alpha
Helix 123	AN6	D	639	647	Right-handed 310
Helix 124	AN7	D	681	683	Right-handed 310
Helix 125	AN8	D	684	699	Right-handed alpha
Helix 126	AN9	D	710	720	Right-handed alpha
Helix 127	AO1	D	739	744	Right-handed alpha
Helix 128	AO2	D	744	757	Right-handed alpha
Helix 129	AO3	D	771	789	Right-handed alpha
Helix 130	AO4	D	793	798	Right-handed alpha
Helix 131	AO5	D	804	806	Right-handed 310
Helix 132	AO6	D	849	866	Right-handed alpha
Helix 133	AO7	D	889	901	Right-handed alpha
Helix 134	AO8	D	903	905	Right-handed 310
Helix 135	AO9	D	906	918	Right-handed alpha
Helix 136	AP1	D	934	946	Right-handed alpha

There are 18 sheets in PDB entry 9W9E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	141	153	first strand
Strand 2	A	158	165	anti-parallel
Strand 3	A	168	175	anti-parallel
Strand 4	A	220	230	parallel
Strand 5	A	197	205	anti-parallel
Strand 6	A	141	153	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	302	303	first strand
Strand 2	A	351	358	parallel
Strand 3	A	371	380	anti-parallel
Strand 4	A	558	564	anti-parallel
Strand 5	A	515	522	anti-parallel
Strand 6	A	507	512	anti-parallel
Strand 7	A	480	484	anti-parallel
Strand 8	A	431	433	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	309	310	first strand
Strand 2	A	328	332	anti-parallel
Strand 3	A	322	325	anti-parallel
Strand 4	D	322	325	anti-parallel
Strand 5	D	328	332	anti-parallel
Strand 6	D	309	310	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	651	654	first strand
Strand 2	A	661	666	anti-parallel
Strand 3	A	671	675	anti-parallel
Strand 4	A	703	709	parallel
Strand 5	A	923	928	anti-parallel
Strand 6	A	724	734	anti-parallel
Strand 7	A	870	882	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	760	763	first strand
Strand 2	A	808	814	anti-parallel
Strand 3	A	820	827	anti-parallel
Strand 4	A	836	842	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	141	153	first strand
Strand 2	B	158	165	anti-parallel
Strand 3	B	168	175	anti-parallel
Strand 4	B	220	230	parallel
Strand 5	B	197	205	anti-parallel
Strand 6	B	141	153	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	302	303	first strand
Strand 2	B	351	358	parallel
Strand 3	B	371	380	anti-parallel
Strand 4	B	558	564	anti-parallel
Strand 5	B	515	522	anti-parallel
Strand 6	B	507	512	anti-parallel
Strand 7	B	480	484	anti-parallel
Strand 8	B	431	433	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	309	310	first strand
Strand 2	B	328	332	anti-parallel
Strand 3	B	322	325	anti-parallel
Strand 4	C	322	325	anti-parallel
Strand 5	C	328	332	anti-parallel
Strand 6	C	309	310	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	651	654	first strand
Strand 2	B	661	666	anti-parallel
Strand 3	B	671	675	anti-parallel
Strand 4	B	703	709	parallel
Strand 5	B	923	928	anti-parallel
Strand 6	B	724	734	anti-parallel
Strand 7	B	870	882	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	760	763	first strand
Strand 2	B	808	814	anti-parallel
Strand 3	B	820	827	anti-parallel
Strand 4	B	836	842	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	141	153	first strand
Strand 2	C	158	165	anti-parallel
Strand 3	C	168	175	anti-parallel
Strand 4	C	220	230	parallel
Strand 5	C	197	205	anti-parallel
Strand 6	C	141	153	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	302	303	first strand
Strand 2	C	351	358	parallel
Strand 3	C	371	380	anti-parallel
Strand 4	C	558	564	anti-parallel
Strand 5	C	515	522	anti-parallel
Strand 6	C	507	512	anti-parallel
Strand 7	C	480	484	anti-parallel
Strand 8	C	431	433	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	651	654	first strand
Strand 2	C	661	666	anti-parallel
Strand 3	C	671	675	anti-parallel
Strand 4	C	703	709	parallel
Strand 5	C	923	928	anti-parallel
Strand 6	C	724	734	anti-parallel
Strand 7	C	870	882	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	760	763	first strand
Strand 2	C	808	814	anti-parallel
Strand 3	C	820	827	anti-parallel
Strand 4	C	836	842	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	141	153	first strand
Strand 2	D	158	165	anti-parallel
Strand 3	D	168	175	anti-parallel
Strand 4	D	220	230	parallel
Strand 5	D	197	205	anti-parallel
Strand 6	D	141	153	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	302	303	first strand
Strand 2	D	351	358	parallel
Strand 3	D	371	380	anti-parallel
Strand 4	D	558	564	anti-parallel
Strand 5	D	515	522	anti-parallel
Strand 6	D	507	512	anti-parallel
Strand 7	D	480	484	anti-parallel
Strand 8	D	431	433	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	651	654	first strand
Strand 2	D	661	666	anti-parallel
Strand 3	D	671	675	anti-parallel
Strand 4	D	703	709	parallel
Strand 5	D	923	928	anti-parallel
Strand 6	D	724	734	anti-parallel
Strand 7	D	870	882	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	760	763	first strand
Strand 2	D	808	814	anti-parallel
Strand 3	D	820	827	anti-parallel
Strand 4	D	836	842	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9W9E

Analysis of interatomic Contacts of Structural Units in PDB entry:
9W9E