Analysis of interatomic Contacts of Structural Units in PDB entry:
9WA9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9WA9 entry

There are 4 chains in PDB entry 9WA9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASP 1368
B
 C 3 A 39
C
 G 1 G 14
D
 C 1 U 100
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 9WA9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
59 91Right-handed alpha
Helix 2
AA2
A
96 103Right-handed alpha
Helix 3
AA3
A
121 132Right-handed alpha
Helix 4
AA4
A
134 145Right-handed alpha
Helix 5
AA5
A
150 164Right-handed alpha
Helix 6
AA6
A
293 306Right-handed alpha
Helix 7
AA7
A
315 343Right-handed alpha
Helix 8
AA8
A
346 353Right-handed alpha
Helix 9
AA9
A
358 364Right-handed alpha
Helix 10
AB1
A
368 383Right-handed alpha
Helix 11
AB2
A
386 395Right-handed alpha
Helix 12
AB3
A
404 410Right-handed 310
Helix 13
AB4
A
411 427Right-handed alpha
Helix 14
AB5
A
430 446Right-handed alpha
Helix 15
AB6
A
477 482Right-handed alpha
Helix 16
AB7
A
483 495Right-handed alpha
Helix 17
AB8
A
512 526Right-handed alpha
Helix 18
AB9
A
541 552Right-handed alpha
Helix 19
AC1
A
561 568Right-handed alpha
Helix 20
AC2
A
591 602Right-handed alpha
Helix 21
AC3
A
603 609Right-handed alpha
Helix 22
AC4
A
612 626Right-handed alpha
Helix 23
AC5
A
629 636Right-handed alpha
Helix 24
AC6
A
637 640Right-handed 310
Helix 25
AC7
A
644 654Right-handed alpha
Helix 26
AC8
A
663 669Right-handed alpha
Helix 27
AC9
A
678 685Right-handed alpha
Helix 28
AD1
A
692 698Right-handed alpha
Helix 29
AD2
A
703 712Right-handed alpha
Helix 30
AD3
A
719 726Right-handed alpha
Helix 31
AD4
A
730 752Right-handed alpha
Helix 32
AD5
A
769 778Right-handed alpha
Helix 33
AD6
A
779 792Right-handed alpha
Helix 34
AD7
A
794 799Right-handed alpha
Helix 35
AD8
A
802 808Right-handed alpha
Helix 36
AD9
A
808 818Right-handed alpha
Helix 37
AE1
A
831 836Right-handed alpha
Helix 38
AE2
A
859 866Right-handed alpha
Helix 39
AE3
A
872 890Right-handed alpha
Helix 40
AE4
A
893 906Right-handed alpha
Helix 41
AE5
A
909 914Right-handed alpha
Helix 42
AE6
A
917 927Right-handed alpha
Helix 43
AE7
A
927 940Right-handed alpha
Helix 44
AE8
A
959 970Right-handed alpha
Helix 45
AE9
A
981 998Right-handed alpha
Helix 46
AF1
A
1078 1087Right-handed alpha
Helix 47
AF2
A
1127 1132Right-handed alpha
Helix 48
AF3
A
1170 1177Right-handed alpha
Helix 49
AF4
A
1177 1186Right-handed alpha
Helix 50
AF5
A
1191 1195Right-handed 310
Helix 51
AF6
A
1207 1209Right-handed 310
Helix 52
AF7
A
1229 1241Right-handed alpha
Helix 53
AF8
A
1248 1262Right-handed alpha
Helix 54
AF9
A
1264 1281Right-handed alpha
Helix 55
AG1
A
1283 1297Right-handed alpha
Helix 56
AG2
A
1301 1317Right-handed alpha
Helix 57
AG3
A
1341 1344Right-handed 310
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There are 8 sheets in PDB entry 9WA9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
954 955first strand
Strand 2
A
758 760parallel
Strand 3
A
5 8parallel
Strand 4
A
15 22anti-parallel
Strand 5
A
48 52anti-parallel
Strand 6
A
1093 1096parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 33first strand
Strand 2
A
42 46anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 36first strand
Strand 2
A
1357 1361parallel
Strand 3
A
1346 1350anti-parallel
Strand 4
A
1202 1205anti-parallel
Strand 5
A
1211 1216anti-parallel
Strand 6
A
1219 1222anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
538 539first strand
Strand 2
A
528 530anti-parallel
Strand 3
A
579 581anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
559 560first strand
Strand 2
A
586 587anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
837 840first strand
Strand 2
A
855 858anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1139 1151first strand
Strand 2
A
1156 1167anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1324 1326first strand
Strand 2
A
1329 1331anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il