Analysis of interatomic Contacts of Structural Units in PDB entry:
9WAD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9WAD entry

There are 4 chains in PDB entry 9WAD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 50PHE 1139
B
 A 2 U 110
C
 C -2 T 31
D
 G 1 G 11
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 9WAD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
54 84Right-handed alpha
Helix 2
AA2
A
91 96Right-handed alpha
Helix 3
AA3
A
104 112Right-handed alpha
Helix 4
AA4
A
118 132Right-handed alpha
Helix 5
AA5
A
149 166Right-handed alpha
Helix 6
AA6
A
169 178Right-handed alpha
Helix 7
AA7
A
211 230Right-handed alpha
Helix 8
AA8
A
235 247Right-handed alpha
Helix 9
AA9
A
297 311Right-handed alpha
Helix 10
AB1
A
329 341Right-handed alpha
Helix 11
AB2
A
385 399Right-handed alpha
Helix 12
AB3
A
406 420Right-handed alpha
Helix 13
AB4
A
422 433Right-handed alpha
Helix 14
AB5
A
436 444Right-handed alpha
Helix 15
AB6
A
456 469Right-handed alpha
Helix 16
AB7
A
471 480Right-handed alpha
Helix 17
AB8
A
505 526Right-handed alpha
Helix 18
AB9
A
701 706Right-handed alpha
Helix 19
AC1
A
706 713Right-handed alpha
Helix 20
AC2
A
914 916Right-handed 310
Helix 21
AC3
A
933 947Right-handed alpha
Helix 22
AC4
A
950 955Right-handed alpha
Helix 23
AC5
A
1019 1023Right-handed 310
Helix 24
AC6
A
1036 1040Right-handed 310
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There are 7 sheets in PDB entry 9WAD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
292 294first strand
Strand 2
A
451 455anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
346 347first strand
Strand 2
A
381 383anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
890 894first strand
Strand 2
A
904 912anti-parallel
Strand 3
A
974 978anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
959 962first strand
Strand 2
A
969 972anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
984 987first strand
Strand 2
A
992 995anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1015 1017first strand
Strand 2
A
999 1006anti-parallel
Strand 3
A
1048 1053anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1105 1109first strand
Strand 2
A
1094 1098anti-parallel
Strand 3
A
1081 1089anti-parallel
Strand 4
A
1058 1063anti-parallel
Strand 5
A
1114 1121anti-parallel
Strand 6
A
1129 1130anti-parallel
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