Analysis of interatomic Contacts of Structural Units in PDB entry:
9WAG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9WAG entry

There are 3 chains in PDB entry 9WAG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 71TYR 280
B
 LEU 18ILE 266
C
 PRO 8GLU 232
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 9WAG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
76 81Right-handed alpha
Helix 2
AA2
A
115 123Right-handed alpha
Helix 3
AA3
A
172 177Right-handed 310
Helix 4
AA4
A
276 280Right-handed 310
Helix 5
AA5
B
91 98Right-handed alpha
Helix 6
AA6
B
189 193Right-handed 310
Helix 7
AA7
C
43 48Right-handed alpha
Helix 8
AA8
C
65 69Right-handed 310
Helix 9
AA9
C
98 105Right-handed alpha
Helix 10
AB1
C
145 151Right-handed alpha
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There are 11 sheets in PDB entry 9WAG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 92first strand
Strand 2
A
253 268anti-parallel
Strand 3
A
127 142anti-parallel
Strand 4
A
192 196anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 92first strand
Strand 2
A
253 268anti-parallel
Strand 3
A
127 142anti-parallel
Strand 4
A
205 206anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 109first strand
Strand 2
A
239 244anti-parallel
Strand 3
A
154 159anti-parallel
Strand 4
A
182 186anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 65first strand
Strand 2
B
247 253anti-parallel
Strand 3
B
69 71anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 65first strand
Strand 2
B
247 253anti-parallel
Strand 3
B
107 112anti-parallel
Strand 4
B
205 209anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
155 156first strand
Strand 2
B
78 82anti-parallel
Strand 3
B
227 238anti-parallel
Strand 4
B
119 128anti-parallel
Strand 5
B
195 199anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
99 101first strand
Strand 2
B
261 263anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
51 52first strand
Strand 2
C
208 216anti-parallel
Strand 3
C
70 72anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
51 52first strand
Strand 2
C
208 216anti-parallel
Strand 3
C
114 120anti-parallel
Strand 4
C
163 168anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
177 178first strand
Strand 2
C
109 111anti-parallel
Strand 3
C
221 222anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
152 157first strand
Strand 2
C
127 135anti-parallel
Strand 3
C
189 199anti-parallel
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