Analysis of interatomic Contacts of Structural Units in PDB entry:
9WAK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9WAK entry

There are 2 chains in PDB entry 9WAK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 39TYR 1023
B
 LYS 13SER 303
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 9WAK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
42 46Right-handed 310
Helix 2
AA2
A
49 55Right-handed alpha
Helix 3
AA3
A
64 76Right-handed alpha
Helix 4
AA4
A
87 97Right-handed alpha
Helix 5
AA5
A
99 120Right-handed alpha
Helix 6
AA6
A
127 160Right-handed alpha
Helix 7
AA7
A
181 185Right-handed 310
Helix 8
AA8
A
261 264Right-handed 310
Helix 9
AA9
A
265 277Right-handed alpha
Helix 10
AB1
A
282 313Right-handed alpha
Helix 11
AB2
A
316 331Right-handed alpha
Helix 12
AB3
A
333 353Right-handed alpha
Helix 13
AB4
A
361 364Right-handed 310
Helix 14
AB5
A
365 370Right-handed alpha
Helix 15
AB6
A
415 428Right-handed alpha
Helix 16
AB7
A
450 464Right-handed alpha
Helix 17
AB8
A
466 474Right-handed alpha
Helix 18
AB9
A
510 517Right-handed alpha
Helix 19
AC1
A
533 543Right-handed alpha
Helix 20
AC2
A
598 608Right-handed alpha
Helix 21
AC3
A
620 631Right-handed alpha
Helix 22
AC4
A
642 648Right-handed alpha
Helix 23
AC5
A
656 660Right-handed 310
Helix 24
AC6
A
667 672Right-handed alpha
Helix 25
AC7
A
677 685Right-handed alpha
Helix 26
AC8
A
694 708Right-handed alpha
Helix 27
AC9
A
718 720Right-handed 310
Helix 28
AD1
A
721 728Right-handed alpha
Helix 29
AD2
A
739 746Right-handed alpha
Helix 30
AD3
A
755 782Right-handed alpha
Helix 31
AD4
A
782 797Right-handed alpha
Helix 32
AD5
A
803 812Right-handed alpha
Helix 33
AD6
A
816 822Right-handed alpha
Helix 34
AD7
A
823 825Right-handed 310
Helix 35
AD8
A
846 856Right-handed alpha
Helix 36
AD9
A
856 877Right-handed alpha
Helix 37
AE1
A
879 883Right-handed 310
Helix 38
AE2
A
886 891Right-handed alpha
Helix 39
AE3
A
907 939Right-handed alpha
Helix 40
AE4
A
973 977Right-handed 310
Helix 41
AE5
A
991 1012Right-handed alpha
Helix 42
AE6
A
1015 1022Right-handed alpha
Helix 43
AE7
B
28 59Right-handed alpha
Helix 44
AE8
B
98 109Right-handed alpha
Helix 45
AE9
B
152 160Right-handed 310
Helix 46
AF1
B
217 225Right-handed alpha
Helix 47
AF2
B
241 243Right-handed 310
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There are 11 sheets in PDB entry 9WAK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 173first strand
Strand 2
A
176 178anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 194first strand
Strand 2
A
248 260anti-parallel
Strand 3
A
202 214anti-parallel
Strand 4
A
225 227anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 194first strand
Strand 2
A
248 260anti-parallel
Strand 3
A
202 214anti-parallel
Strand 4
A
242 243anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
356 358first strand
Strand 2
A
748 750anti-parallel
Strand 3
A
730 734parallel
Strand 4
A
712 716parallel
Strand 5
A
372 375parallel
Strand 6
A
612 616parallel
Strand 7
A
687 691parallel
Strand 8
A
662 666parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
396 399first strand
Strand 2
A
387 393anti-parallel
Strand 3
A
583 592anti-parallel
Strand 4
A
551 557anti-parallel
Strand 5
A
507 509anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
396 399first strand
Strand 2
A
387 393anti-parallel
Strand 3
A
583 592anti-parallel
Strand 4
A
518 523parallel
Strand 5
A
526 529anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
432 433first strand
Strand 2
A
447 448anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
898 899first strand
Strand 2
A
905 906anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 80first strand
Strand 2
B
175 180anti-parallel
Strand 3
B
259 263anti-parallel
Strand 4
B
227 230anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 90first strand
Strand 2
B
294 301parallel
Strand 3
B
271 278anti-parallel
Strand 4
B
208 215anti-parallel
Strand 5
B
237 239anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
123 124first strand
Strand 2
B
148 149parallel
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