Analysis of interatomic Contacts of Structural Units in PDB entry:
9WAR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9WAR entry

There are 4 chains in PDB entry 9WAR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 6	HIS 454
B	TYR 10	HIS 454
C	LEU 9	HIS 454
D	ASN 8	VAL 16

There are 74 helices in PDB entry 9WAR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	32	46	Right-handed alpha
Helix 2	AA2	A	58	71	Right-handed alpha
Helix 3	AA3	A	93	97	Right-handed 310
Helix 4	AA4	A	113	125	Right-handed alpha
Helix 5	AA5	A	137	141	Right-handed 310
Helix 6	AA6	A	143	153	Right-handed alpha
Helix 7	AA7	A	188	199	Right-handed alpha
Helix 8	AA8	A	200	202	Right-handed 310
Helix 9	AA9	A	216	230	Right-handed alpha
Helix 10	AB1	A	262	277	Right-handed alpha
Helix 11	AB2	A	291	294	Right-handed 310
Helix 12	AB3	A	295	303	Right-handed alpha
Helix 13	AB4	A	339	341	Right-handed 310
Helix 14	AB5	A	342	350	Right-handed alpha
Helix 15	AB6	A	366	383	Right-handed alpha
Helix 16	AB7	A	412	420	Right-handed alpha
Helix 17	AB8	A	421	425	Right-handed 310
Helix 18	AB9	A	444	451	Right-handed alpha
Helix 19	AC1	B	32	46	Right-handed alpha
Helix 20	AC2	B	58	71	Right-handed alpha
Helix 21	AC3	B	93	97	Right-handed 310
Helix 22	AC4	B	110	125	Right-handed alpha
Helix 23	AC5	B	137	141	Right-handed 310
Helix 24	AC6	B	143	153	Right-handed alpha
Helix 25	AC7	B	188	199	Right-handed alpha
Helix 26	AC8	B	200	202	Right-handed 310
Helix 27	AC9	B	216	230	Right-handed alpha
Helix 28	AD1	B	262	277	Right-handed alpha
Helix 29	AD2	B	291	294	Right-handed 310
Helix 30	AD3	B	295	303	Right-handed alpha
Helix 31	AD4	B	339	341	Right-handed 310
Helix 32	AD5	B	342	350	Right-handed alpha
Helix 33	AD6	B	366	383	Right-handed alpha
Helix 34	AD7	B	412	420	Right-handed alpha
Helix 35	AD8	B	421	425	Right-handed 310
Helix 36	AD9	B	443	451	Right-handed alpha
Helix 37	AE1	C	32	46	Right-handed alpha
Helix 38	AE2	C	58	71	Right-handed alpha
Helix 39	AE3	C	93	97	Right-handed 310
Helix 40	AE4	C	113	125	Right-handed alpha
Helix 41	AE5	C	137	141	Right-handed 310
Helix 42	AE6	C	143	153	Right-handed alpha
Helix 43	AE7	C	188	199	Right-handed alpha
Helix 44	AE8	C	200	202	Right-handed 310
Helix 45	AE9	C	216	230	Right-handed alpha
Helix 46	AF1	C	262	277	Right-handed alpha
Helix 47	AF2	C	291	294	Right-handed 310
Helix 48	AF3	C	295	303	Right-handed alpha
Helix 49	AF4	C	339	341	Right-handed 310
Helix 50	AF5	C	342	350	Right-handed alpha
Helix 51	AF6	C	351	353	Right-handed 310
Helix 52	AF7	C	366	383	Right-handed alpha
Helix 53	AF8	C	412	420	Right-handed alpha
Helix 54	AF9	C	421	425	Right-handed 310
Helix 55	AG1	C	443	451	Right-handed alpha
Helix 56	AG2	D	32	46	Right-handed alpha
Helix 57	AG3	D	58	71	Right-handed alpha
Helix 58	AG4	D	93	97	Right-handed 310
Helix 59	AG5	D	113	125	Right-handed alpha
Helix 60	AG6	D	137	141	Right-handed 310
Helix 61	AG7	D	143	153	Right-handed alpha
Helix 62	AG8	D	188	199	Right-handed alpha
Helix 63	AG9	D	200	202	Right-handed 310
Helix 64	AH1	D	216	229	Right-handed alpha
Helix 65	AH2	D	262	277	Right-handed alpha
Helix 66	AH3	D	291	294	Right-handed 310
Helix 67	AH4	D	295	303	Right-handed alpha
Helix 68	AH5	D	339	341	Right-handed 310
Helix 69	AH6	D	342	350	Right-handed alpha
Helix 70	AH7	D	351	353	Right-handed 310
Helix 71	AH8	D	366	383	Right-handed alpha
Helix 72	AH9	D	412	420	Right-handed alpha
Helix 73	AI1	D	421	424	Right-handed 310
Helix 74	AI2	D	443	451	Right-handed alpha

There are 28 sheets in PDB entry 9WAR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	407	408	first strand
Strand 2	A	429	432	parallel
Strand 3	A	11	17	anti-parallel
Strand 4	B	11	17	anti-parallel
Strand 5	B	429	432	anti-parallel
Strand 6	B	407	408	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	22	23	first strand
Strand 2	A	452	453	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	25	28	first strand
Strand 2	A	279	283	parallel
Strand 3	A	313	317	anti-parallel
Strand 4	A	306	309	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	78	first strand
Strand 2	A	83	87	anti-parallel
Strand 3	A	49	53	anti-parallel
Strand 4	A	256	258	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	102	106	first strand
Strand 2	A	129	133	parallel
Strand 3	A	168	171	anti-parallel
Strand 4	A	156	158	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	179	183	first strand
Strand 2	A	206	210	parallel
Strand 3	A	242	245	anti-parallel
Strand 4	A	235	236	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	329	330	first strand
Strand 2	A	353	354	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	333	334	first strand
Strand 2	A	357	359	parallel
Strand 3	A	394	397	anti-parallel
Strand 4	A	386	389	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	22	23	first strand
Strand 2	B	452	453	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	25	28	first strand
Strand 2	B	279	283	parallel
Strand 3	B	313	317	anti-parallel
Strand 4	B	306	309	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	74	78	first strand
Strand 2	B	83	87	anti-parallel
Strand 3	B	49	53	anti-parallel
Strand 4	B	256	258	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	106	first strand
Strand 2	B	129	133	parallel
Strand 3	B	168	171	anti-parallel
Strand 4	B	156	158	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	179	183	first strand
Strand 2	B	206	210	parallel
Strand 3	B	242	245	anti-parallel
Strand 4	B	235	236	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	329	330	first strand
Strand 2	B	353	354	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	333	334	first strand
Strand 2	B	357	360	parallel
Strand 3	B	393	397	anti-parallel
Strand 4	B	386	389	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	407	408	first strand
Strand 2	C	429	432	parallel
Strand 3	C	11	17	anti-parallel
Strand 4	D	11	17	anti-parallel
Strand 5	D	429	432	anti-parallel
Strand 6	D	407	408	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	22	23	first strand
Strand 2	C	452	453	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	25	28	first strand
Strand 2	C	279	283	parallel
Strand 3	C	313	317	anti-parallel
Strand 4	C	306	309	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	75	78	first strand
Strand 2	C	83	87	anti-parallel
Strand 3	C	49	53	anti-parallel
Strand 4	C	256	258	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	102	106	first strand
Strand 2	C	129	133	parallel
Strand 3	C	168	171	anti-parallel
Strand 4	C	156	158	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	179	183	first strand
Strand 2	C	206	210	parallel
Strand 3	C	242	245	anti-parallel
Strand 4	C	235	236	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	333	334	first strand
Strand 2	C	357	359	parallel
Strand 3	C	394	397	anti-parallel
Strand 4	C	386	389	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	22	23	first strand
Strand 2	D	452	453	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	25	28	first strand
Strand 2	D	279	283	parallel
Strand 3	D	313	317	anti-parallel
Strand 4	D	306	309	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	74	78	first strand
Strand 2	D	83	87	anti-parallel
Strand 3	D	49	53	anti-parallel
Strand 4	D	256	258	parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	102	106	first strand
Strand 2	D	129	133	parallel
Strand 3	D	168	171	anti-parallel
Strand 4	D	156	158	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	179	183	first strand
Strand 2	D	206	210	parallel
Strand 3	D	242	245	anti-parallel
Strand 4	D	235	236	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	333	334	first strand
Strand 2	D	357	359	parallel
Strand 3	D	394	397	anti-parallel
Strand 4	D	386	389	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9WAR

Analysis of interatomic Contacts of Structural Units in PDB entry:
9WAR