Analysis of interatomic Contacts of Structural Units in PDB entry:
9WAZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9WAZ entry

There is 1 chain in PDB entry 9WAZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 3PRO 358
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 9WAZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 7Right-handed 310
Helix 2
AA2
A
8 24Right-handed alpha
Helix 3
AA3
A
25 38Right-handed alpha
Helix 4
AA4
A
39 48Right-handed alpha
Helix 5
AA5
A
52 59Right-handed alpha
Helix 6
AA6
A
63 65Right-handed 310
Helix 7
AA7
A
66 80Right-handed alpha
Helix 8
AA8
A
101 107Right-handed 310
Helix 9
AA9
A
114 122Right-handed alpha
Helix 10
AB1
A
123 132Right-handed alpha
Helix 11
AB2
A
132 138Right-handed alpha
Helix 12
AB3
A
143 150Right-handed alpha
Helix 13
AB4
A
152 159Right-handed alpha
Helix 14
AB5
A
163 187Right-handed alpha
Helix 15
AB6
A
187 192Right-handed alpha
Helix 16
AB7
A
205 215Right-handed alpha
Helix 17
AB8
A
260 264Right-handed 310
Helix 18
AB9
A
265 280Right-handed alpha
Helix 19
AC1
A
304 321Right-handed alpha
Helix 20
AC2
A
326 337Right-handed alpha
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There are 2 sheets in PDB entry 9WAZ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 87first strand
Strand 2
A
95 99anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 242first strand
Strand 2
A
219 224parallel
Strand 3
A
196 200parallel
Strand 4
A
254 258parallel
Strand 5
A
288 293parallel
Strand 6
A
351 357anti-parallel
Strand 7
A
341 348anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il