Analysis of interatomic Contacts of Structural Units in PDB entry:
9WBM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9WBM entry

There are 4 chains in PDB entry 9WBM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 6	TYR 347
B	ASP 6	TYR 347
C	ASP 6	TYR 347
D	ASP 6	TYR 347

There are 80 helices in PDB entry 9WBM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	19	Right-handed alpha
Helix 2	AA2	A	19	33	Right-handed alpha
Helix 3	AA3	A	34	43	Right-handed alpha
Helix 4	AA4	A	48	54	Right-handed alpha
Helix 5	AA5	A	61	75	Right-handed alpha
Helix 6	AA6	A	93	99	Right-handed 310
Helix 7	AA7	A	106	114	Right-handed alpha
Helix 8	AA8	A	115	120	Right-handed alpha
Helix 9	AA9	A	121	125	Right-handed 310
Helix 10	AB1	A	126	130	Right-handed 310
Helix 11	AB2	A	135	142	Right-handed alpha
Helix 12	AB3	A	144	152	Right-handed alpha
Helix 13	AB4	A	152	179	Right-handed alpha
Helix 14	AB5	A	180	183	Right-handed 310
Helix 15	AB6	A	196	206	Right-handed alpha
Helix 16	AB7	A	216	221	Right-handed alpha
Helix 17	AB8	A	251	255	Right-handed 310
Helix 18	AB9	A	256	271	Right-handed alpha
Helix 19	AC1	A	293	308	Right-handed alpha
Helix 20	AC2	A	314	325	Right-handed alpha
Helix 21	AC3	B	7	19	Right-handed alpha
Helix 22	AC4	B	19	33	Right-handed alpha
Helix 23	AC5	B	34	43	Right-handed alpha
Helix 24	AC6	B	48	54	Right-handed alpha
Helix 25	AC7	B	61	75	Right-handed alpha
Helix 26	AC8	B	93	99	Right-handed 310
Helix 27	AC9	B	106	114	Right-handed alpha
Helix 28	AD1	B	115	120	Right-handed alpha
Helix 29	AD2	B	121	125	Right-handed 310
Helix 30	AD3	B	126	130	Right-handed 310
Helix 31	AD4	B	135	142	Right-handed alpha
Helix 32	AD5	B	144	152	Right-handed alpha
Helix 33	AD6	B	152	179	Right-handed alpha
Helix 34	AD7	B	180	183	Right-handed 310
Helix 35	AD8	B	196	206	Right-handed alpha
Helix 36	AD9	B	216	221	Right-handed alpha
Helix 37	AE1	B	251	255	Right-handed 310
Helix 38	AE2	B	256	271	Right-handed alpha
Helix 39	AE3	B	293	308	Right-handed alpha
Helix 40	AE4	B	314	325	Right-handed alpha
Helix 41	AE5	C	7	19	Right-handed alpha
Helix 42	AE6	C	19	33	Right-handed alpha
Helix 43	AE7	C	34	43	Right-handed alpha
Helix 44	AE8	C	48	54	Right-handed alpha
Helix 45	AE9	C	61	75	Right-handed alpha
Helix 46	AF1	C	93	99	Right-handed 310
Helix 47	AF2	C	106	114	Right-handed alpha
Helix 48	AF3	C	115	120	Right-handed alpha
Helix 49	AF4	C	121	125	Right-handed 310
Helix 50	AF5	C	126	130	Right-handed 310
Helix 51	AF6	C	135	142	Right-handed alpha
Helix 52	AF7	C	144	152	Right-handed alpha
Helix 53	AF8	C	152	179	Right-handed alpha
Helix 54	AF9	C	180	183	Right-handed 310
Helix 55	AG1	C	196	206	Right-handed alpha
Helix 56	AG2	C	216	221	Right-handed alpha
Helix 57	AG3	C	251	255	Right-handed 310
Helix 58	AG4	C	256	271	Right-handed alpha
Helix 59	AG5	C	293	308	Right-handed alpha
Helix 60	AG6	C	314	325	Right-handed alpha
Helix 61	AG7	D	7	19	Right-handed alpha
Helix 62	AG8	D	19	33	Right-handed alpha
Helix 63	AG9	D	34	43	Right-handed alpha
Helix 64	AH1	D	48	54	Right-handed alpha
Helix 65	AH2	D	61	75	Right-handed alpha
Helix 66	AH3	D	93	99	Right-handed 310
Helix 67	AH4	D	106	114	Right-handed alpha
Helix 68	AH5	D	115	120	Right-handed alpha
Helix 69	AH6	D	121	125	Right-handed 310
Helix 70	AH7	D	126	130	Right-handed 310
Helix 71	AH8	D	135	142	Right-handed alpha
Helix 72	AH9	D	144	152	Right-handed alpha
Helix 73	AI1	D	152	179	Right-handed alpha
Helix 74	AI2	D	180	183	Right-handed 310
Helix 75	AI3	D	196	206	Right-handed alpha
Helix 76	AI4	D	216	221	Right-handed alpha
Helix 77	AI5	D	251	255	Right-handed 310
Helix 78	AI6	D	256	271	Right-handed alpha
Helix 79	AI7	D	293	308	Right-handed alpha
Helix 80	AI8	D	314	325	Right-handed alpha

There are 8 sheets in PDB entry 9WBM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	47	first strand
Strand 2	A	86	91	anti-parallel
Strand 3	A	78	83	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	230	233	first strand
Strand 2	A	210	215	parallel
Strand 3	A	187	191	parallel
Strand 4	A	245	249	parallel
Strand 5	A	277	282	parallel
Strand 6	A	340	345	anti-parallel
Strand 7	A	329	333	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	47	first strand
Strand 2	B	86	91	anti-parallel
Strand 3	B	78	83	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	230	233	first strand
Strand 2	B	210	215	parallel
Strand 3	B	187	191	parallel
Strand 4	B	245	249	parallel
Strand 5	B	277	282	parallel
Strand 6	B	340	345	anti-parallel
Strand 7	B	329	333	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	46	47	first strand
Strand 2	C	86	91	anti-parallel
Strand 3	C	78	83	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	230	233	first strand
Strand 2	C	210	215	parallel
Strand 3	C	187	191	parallel
Strand 4	C	245	249	parallel
Strand 5	C	277	282	parallel
Strand 6	C	340	345	anti-parallel
Strand 7	C	329	333	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	46	47	first strand
Strand 2	D	86	91	anti-parallel
Strand 3	D	78	83	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	230	233	first strand
Strand 2	D	210	215	parallel
Strand 3	D	187	191	parallel
Strand 4	D	245	249	parallel
Strand 5	D	277	282	parallel
Strand 6	D	340	345	anti-parallel
Strand 7	D	329	333	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9WBM

Analysis of interatomic Contacts of Structural Units in PDB entry:
9WBM