Analysis of interatomic Contacts of Structural Units in PDB entry:
9WC1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9WC1 entry

There are 4 chains in PDB entry 9WC1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	PHE 375
B	SER 0	PRO 427
C	GLU 26	THR 52
D	GLU 1	LYS 64

There are 43 helices in PDB entry 9WC1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	55	61	Right-handed alpha
Helix 2	AA2	A	78	92	Right-handed alpha
Helix 3	AA3	A	97	101	Right-handed 310
Helix 4	AA4	A	112	126	Right-handed alpha
Helix 5	AA5	A	137	145	Right-handed alpha
Helix 6	AA6	A	181	197	Right-handed alpha
Helix 7	AA7	A	202	216	Right-handed alpha
Helix 8	AA8	A	222	233	Right-handed alpha
Helix 9	AA9	A	252	257	Right-handed alpha
Helix 10	AB1	A	258	262	Right-handed 310
Helix 11	AB2	A	263	268	Right-handed 310
Helix 12	AB3	A	273	284	Right-handed alpha
Helix 13	AB4	A	289	296	Right-handed alpha
Helix 14	AB5	A	301	306	Right-handed 310
Helix 15	AB6	A	308	321	Right-handed alpha
Helix 16	AB7	A	334	336	Right-handed 310
Helix 17	AB8	A	337	349	Right-handed alpha
Helix 18	AB9	A	351	355	Right-handed 310
Helix 19	AC1	A	359	366	Right-handed alpha
Helix 20	AC2	A	368	374	Right-handed alpha
Helix 21	AC3	B	69	74	Right-handed alpha
Helix 22	AC4	B	93	108	Right-handed alpha
Helix 23	AC5	B	112	116	Right-handed 310
Helix 24	AC6	B	127	142	Right-handed alpha
Helix 25	AC7	B	152	160	Right-handed alpha
Helix 26	AC8	B	187	190	Right-handed 310
Helix 27	AC9	B	196	212	Right-handed alpha
Helix 28	AD1	B	217	219	Right-handed 310
Helix 29	AD2	B	245	265	Right-handed alpha
Helix 30	AD3	B	273	278	Right-handed alpha
Helix 31	AD4	B	297	302	Right-handed alpha
Helix 32	AD5	B	303	308	Right-handed alpha
Helix 33	AD6	B	309	312	Right-handed 310
Helix 34	AD7	B	322	334	Right-handed alpha
Helix 35	AD8	B	338	344	Right-handed alpha
Helix 36	AD9	B	350	355	Right-handed 310
Helix 37	AE1	B	357	370	Right-handed alpha
Helix 38	AE2	B	384	389	Right-handed alpha
Helix 39	AE3	B	389	400	Right-handed alpha
Helix 40	AE4	B	401	408	Right-handed 310
Helix 41	AE5	B	411	418	Right-handed alpha
Helix 42	AE6	B	420	426	Right-handed alpha
Helix 43	AE7	D	2	63	Right-handed alpha

There are 14 sheets in PDB entry 9WC1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	31	first strand
Strand 2	A	17	21	anti-parallel
Strand 3	A	8	12	anti-parallel
Strand 4	A	103	107	parallel
Strand 5	A	131	136	parallel
Strand 6	A	357	358	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	54	first strand
Strand 2	A	35	38	anti-parallel
Strand 3	A	65	68	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	72	first strand
Strand 2	A	75	76	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	170	first strand
Strand 2	A	160	166	anti-parallel
Strand 3	A	176	178	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	170	first strand
Strand 2	A	160	166	anti-parallel
Strand 3	A	150	154	anti-parallel
Strand 4	A	297	300	parallel
Strand 5	A	329	330	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	241	first strand
Strand 2	A	247	250	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	33	36	first strand
Strand 2	B	20	25	anti-parallel
Strand 3	B	12	16	anti-parallel
Strand 4	B	118	122	parallel
Strand 5	B	146	151	parallel
Strand 6	B	409	410	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	67	first strand
Strand 2	B	39	42	anti-parallel
Strand 3	B	81	83	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	86	87	first strand
Strand 2	B	90	91	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	184	185	first strand
Strand 2	B	175	181	anti-parallel
Strand 3	B	191	193	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	184	185	first strand
Strand 2	B	175	181	anti-parallel
Strand 3	B	165	170	anti-parallel
Strand 4	B	346	349	parallel
Strand 5	B	378	379	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	221	224	first strand
Strand 2	B	235	237	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	283	286	first strand
Strand 2	B	292	295	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	31	37	first strand
Strand 2	C	44	50	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9WC1

Analysis of interatomic Contacts of Structural Units in PDB entry:
9WC1