Analysis of interatomic Contacts of Structural Units in PDB entry:
9WDC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9WDC entry

There are 4 chains in PDB entry 9WDC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 1ASP 770
B
 GLY 15GLY 30
C
 GLY 15GLY 30
D
 PRO 16GLY 30
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 9WDC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 14Right-handed alpha
Helix 2
AA2
A
17 28Right-handed alpha
Helix 3
AA3
A
29 33Right-handed 310
Helix 4
AA4
A
40 48Right-handed alpha
Helix 5
AA5
A
49 64Right-handed alpha
Helix 6
AA6
A
74 92Right-handed alpha
Helix 7
AA7
A
93 96Right-handed 310
Helix 8
AA8
A
100 105Right-handed alpha
Helix 9
AA9
A
107 117Right-handed alpha
Helix 10
AB1
A
124 138Right-handed alpha
Helix 11
AB2
A
144 151Right-handed alpha
Helix 12
AB3
A
151 161Right-handed alpha
Helix 13
AB4
A
161 166Right-handed alpha
Helix 14
AB5
A
168 194Right-handed alpha
Helix 15
AB6
A
196 200Right-handed 310
Helix 16
AB7
A
207 218Right-handed alpha
Helix 17
AB8
A
226 241Right-handed alpha
Helix 18
AB9
A
242 244Right-handed 310
Helix 19
AC1
A
248 261Right-handed alpha
Helix 20
AC2
A
265 279Right-handed alpha
Helix 21
AC3
A
290 303Right-handed alpha
Helix 22
AC4
A
323 346Right-handed alpha
Helix 23
AC5
A
355 359Right-handed 310
Helix 24
AC6
A
367 372Right-handed alpha
Helix 25
AC7
A
373 378Right-handed alpha
Helix 26
AC8
A
408 426Right-handed alpha
Helix 27
AC9
A
434 441Right-handed 310
Helix 28
AD1
A
442 454Right-handed alpha
Helix 29
AD2
A
465 471Right-handed alpha
Helix 30
AD3
A
482 488Right-handed alpha
Helix 31
AD4
A
495 511Right-handed alpha
Helix 32
AD5
A
512 525Right-handed alpha
Helix 33
AD6
A
527 540Right-handed alpha
Helix 34
AD7
A
541 558Right-handed alpha
Helix 35
AD8
A
568 573Right-handed 310
Helix 36
AD9
A
579 592Right-handed alpha
Helix 37
AE1
A
622 643Right-handed alpha
Helix 38
AE2
A
646 652Right-handed 310
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There are 4 sheets in PDB entry 9WDC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
305 309first strand
Strand 2
A
314 318anti-parallel
Strand 3
A
360 365parallel
Strand 4
A
394 398parallel
Strand 5
A
386 389anti-parallel
Strand 6
C
26 27anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
594 602first strand
Strand 2
A
607 619anti-parallel
Strand 3
A
666 677anti-parallel
Strand 4
A
653 661anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
696 697first strand
Strand 2
A
759 767parallel
Strand 3
A
745 754anti-parallel
Strand 4
A
718 724anti-parallel
Strand 5
A
730 731anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
703 705first strand
Strand 2
A
737 739anti-parallel
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