Analysis of interatomic Contacts of Structural Units in PDB entry:
9WER


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9WER entry

There are 2 chains in PDB entry 9WER (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 10HIS 211
A
 MET 213ARG 405
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 9WER. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 30Right-handed alpha
Helix 2
AA2
A
31 33Right-handed 310
Helix 3
AA3
A
44 65Right-handed alpha
Helix 4
AA4
A
69 71Right-handed 310
Helix 5
AA5
A
78 94Right-handed alpha
Helix 6
AA6
A
95 98Right-handed 310
Helix 7
AA7
A
108 120Right-handed alpha
Helix 8
AA8
A
137 145Right-handed alpha
Helix 9
AA9
A
166 178Right-handed alpha
Helix 10
AB1
A
197 202Right-handed alpha
Helix 11
AB2
A
211 213Right-handed 310
Helix 12
AB3
A
238 243Right-handed 310
Helix 13
AB4
A
249 287Right-handed alpha
Helix 14
AB5
A
316 325Right-handed alpha
Helix 15
AB6
A
344 349Right-handed alpha
Helix 16
AB7
A
352 357Right-handed alpha
Helix 17
AB8
A
369 389Right-handed alpha
Helix 18
AB9
A
393 404Right-handed alpha
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There are 3 sheets in PDB entry 9WER. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 12first strand
Strand 2
A
327 328parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 76first strand
Strand 2
A
220 224anti-parallel
Strand 3
A
205 209anti-parallel
Strand 4
A
182 186parallel
Strand 5
A
149 153parallel
Strand 6
A
100 104parallel
Strand 7
A
124 128parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
292 295first strand
Strand 2
A
305 310anti-parallel
Strand 3
A
359 363anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il