Analysis of interatomic Contacts of Structural Units in PDB entry:
9WFO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9WFO entry

There are 2 chains in PDB entry 9WFO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 THR 29LYS 45
A
 SER 32PRO 727
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 9WFO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
33 38Right-handed alpha
Helix 2
AA2
A
33 39Right-handed alpha
Helix 3
AA3
A
41 45Right-handed 310
Helix 4
AA4
A
47 56Right-handed alpha
Helix 5
AA5
A
61 82Right-handed alpha
Helix 6
AA6
A
84 86Right-handed 310
Helix 7
AA7
A
87 92Right-handed alpha
Helix 8
AA8
A
111 132Right-handed alpha
Helix 9
AA9
A
134 153Right-handed alpha
Helix 10
AB1
A
154 157Right-handed 310
Helix 11
AB2
A
158 174Right-handed alpha
Helix 12
AB3
A
181 187Right-handed alpha
Helix 13
AB4
A
197 218Right-handed alpha
Helix 14
AB5
A
220 225Right-handed alpha
Helix 15
AB6
A
229 237Right-handed 310
Helix 16
AB7
A
238 243Right-handed alpha
Helix 17
AB8
A
246 272Right-handed alpha
Helix 18
AB9
A
275 294Right-handed alpha
Helix 19
AC1
A
298 307Right-handed alpha
Helix 20
AC2
A
308 311Right-handed 310
Helix 21
AC3
A
314 323Right-handed alpha
Helix 22
AC4
A
324 331Right-handed alpha
Helix 23
AC5
A
357 377Right-handed alpha
Helix 24
AC6
A
378 383Right-handed 310
Helix 25
AC7
A
384 388Right-handed 310
Helix 26
AC8
A
435 439Right-handed 310
Helix 27
AC9
A
440 455Right-handed alpha
Helix 28
AD1
A
456 459Right-handed 310
Helix 29
AD2
A
506 510Right-handed 310
Helix 30
AD3
A
511 523Right-handed alpha
Helix 31
AD4
A
605 611Right-handed alpha
Helix 32
AD5
A
657 675Right-handed alpha
Helix 33
AD6
A
676 709Right-handed alpha
Helix 34
AD7
A
712 725Right-handed alpha
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There are 3 sheets in PDB entry 9WFO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 32first strand
Strand 2
A
423 426anti-parallel
Strand 3
A
406 417anti-parallel
Strand 4
A
463 473anti-parallel
Strand 5
A
478 480anti-parallel
Strand 6
A
528 533parallel
Strand 7
A
600 604anti-parallel
Strand 8
A
549 554anti-parallel
Strand 9
A
578 580anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 59first strand
Strand 2
A
195 196anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
539 543first strand
Strand 2
A
586 591anti-parallel
Strand 3
A
560 564anti-parallel
Strand 4
A
569 573anti-parallel
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