Analysis of interatomic Contacts of Structural Units in PDB entry:
9WFQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9WFQ entry

There are 2 chains in PDB entry 9WFQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	SER 1500
B	MET 1	SER 1500

There are144 helices in PDB entry 9WFQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	11	Right-handed alpha
Helix 2	AA2	A	26	28	Right-handed 310
Helix 3	AA3	A	29	37	Right-handed alpha
Helix 4	AA4	A	38	57	Right-handed alpha
Helix 5	AA5	A	70	95	Right-handed alpha
Helix 6	AA6	A	107	132	Right-handed alpha
Helix 7	AA7	A	140	162	Right-handed alpha
Helix 8	AA8	A	163	165	Right-handed 310
Helix 9	AA9	A	169	192	Right-handed alpha
Helix 10	AB1	A	234	239	Right-handed alpha
Helix 11	AB2	A	242	252	Right-handed alpha
Helix 12	AB3	A	255	259	Right-handed 310
Helix 13	AB4	A	263	266	Right-handed 310
Helix 14	AB5	A	267	280	Right-handed alpha
Helix 15	AB6	A	290	298	Right-handed alpha
Helix 16	AB7	A	298	306	Right-handed alpha
Helix 17	AB8	A	306	314	Right-handed alpha
Helix 18	AB9	A	317	332	Right-handed alpha
Helix 19	AC1	A	338	359	Right-handed alpha
Helix 20	AC2	A	359	364	Right-handed alpha
Helix 21	AC3	A	364	385	Right-handed alpha
Helix 22	AC4	A	389	405	Right-handed alpha
Helix 23	AC5	A	405	413	Right-handed alpha
Helix 24	AC6	A	418	436	Right-handed alpha
Helix 25	AC7	A	441	451	Right-handed alpha
Helix 26	AC8	A	452	487	Right-handed alpha
Helix 27	AC9	A	487	492	Right-handed alpha
Helix 28	AD1	A	496	530	Right-handed alpha
Helix 29	AD2	A	531	547	Right-handed alpha
Helix 30	AD3	A	556	595	Right-handed alpha
Helix 31	AD4	A	654	664	Right-handed alpha
Helix 32	AD5	A	693	700	Right-handed alpha
Helix 33	AD6	A	705	716	Right-handed alpha
Helix 34	AD7	A	718	724	Right-handed alpha
Helix 35	AD8	A	727	731	Right-handed 310
Helix 36	AD9	A	741	757	Right-handed alpha
Helix 37	AE1	A	773	781	Right-handed alpha
Helix 38	AE2	A	799	805	Right-handed 310
Helix 39	AE3	A	821	826	Right-handed alpha
Helix 40	AE4	A	829	839	Right-handed alpha
Helix 41	AE5	A	904	916	Right-handed alpha
Helix 42	AE6	A	917	947	Right-handed alpha
Helix 43	AE7	A	955	1002	Right-handed alpha
Helix 44	AE8	A	1005	1011	Right-handed alpha
Helix 45	AE9	A	1015	1030	Right-handed alpha
Helix 46	AF1	A	1030	1056	Right-handed alpha
Helix 47	AF2	A	1056	1062	Right-handed alpha
Helix 48	AF3	A	1063	1090	Right-handed alpha
Helix 49	AF4	A	1092	1097	Right-handed alpha
Helix 50	AF5	A	1097	1105	Right-handed alpha
Helix 51	AF6	A	1105	1111	Right-handed alpha
Helix 52	AF7	A	1112	1114	Right-handed 310
Helix 53	AF8	A	1117	1128	Right-handed alpha
Helix 54	AF9	A	1130	1135	Right-handed alpha
Helix 55	AG1	A	1135	1143	Right-handed alpha
Helix 56	AG2	A	1148	1157	Right-handed alpha
Helix 57	AG3	A	1158	1166	Right-handed alpha
Helix 58	AG4	A	1171	1175	Right-handed 310
Helix 59	AG5	A	1177	1187	Right-handed alpha
Helix 60	AG6	A	1188	1202	Right-handed alpha
Helix 61	AG7	A	1207	1218	Right-handed alpha
Helix 62	AG8	A	1283	1290	Right-handed alpha
Helix 63	AG9	A	1311	1317	Right-handed alpha
Helix 64	AH1	A	1332	1338	Right-handed alpha
Helix 65	AH2	A	1344	1355	Right-handed alpha
Helix 66	AH3	A	1357	1363	Right-handed alpha
Helix 67	AH4	A	1366	1370	Right-handed 310
Helix 68	AH5	A	1380	1396	Right-handed alpha
Helix 69	AH6	A	1410	1425	Right-handed alpha
Helix 70	AH7	A	1459	1466	Right-handed alpha
Helix 71	AH8	A	1469	1477	Right-handed alpha
Helix 72	AH9	A	1479	1498	Right-handed alpha
Helix 73	AI1	B	6	11	Right-handed alpha
Helix 74	AI2	B	26	28	Right-handed 310
Helix 75	AI3	B	29	37	Right-handed alpha
Helix 76	AI4	B	38	57	Right-handed alpha
Helix 77	AI5	B	70	95	Right-handed alpha
Helix 78	AI6	B	107	132	Right-handed alpha
Helix 79	AI7	B	140	162	Right-handed alpha
Helix 80	AI8	B	163	165	Right-handed 310
Helix 81	AI9	B	169	192	Right-handed alpha
Helix 82	AJ1	B	234	239	Right-handed alpha
Helix 83	AJ2	B	242	252	Right-handed alpha
Helix 84	AJ3	B	255	259	Right-handed 310
Helix 85	AJ4	B	263	266	Right-handed 310
Helix 86	AJ5	B	267	280	Right-handed alpha
Helix 87	AJ6	B	290	298	Right-handed alpha
Helix 88	AJ7	B	298	306	Right-handed alpha
Helix 89	AJ8	B	306	314	Right-handed alpha
Helix 90	AJ9	B	317	332	Right-handed alpha
Helix 91	AK1	B	338	359	Right-handed alpha
Helix 92	AK2	B	359	364	Right-handed alpha
Helix 93	AK3	B	364	385	Right-handed alpha
Helix 94	AK4	B	389	405	Right-handed alpha
Helix 95	AK5	B	405	413	Right-handed alpha
Helix 96	AK6	B	418	436	Right-handed alpha
Helix 97	AK7	B	441	451	Right-handed alpha
Helix 98	AK8	B	452	487	Right-handed alpha
Helix 99	AK9	B	487	492	Right-handed alpha
Helix 100	AL1	B	496	530	Right-handed alpha
Helix 101	AL2	B	531	547	Right-handed alpha
Helix 102	AL3	B	556	595	Right-handed alpha
Helix 103	AL4	B	654	664	Right-handed alpha
Helix 104	AL5	B	693	700	Right-handed alpha
Helix 105	AL6	B	705	716	Right-handed alpha
Helix 106	AL7	B	718	724	Right-handed alpha
Helix 107	AL8	B	727	731	Right-handed 310
Helix 108	AL9	B	741	757	Right-handed alpha
Helix 109	AM1	B	773	781	Right-handed alpha
Helix 110	AM2	B	799	805	Right-handed 310
Helix 111	AM3	B	821	826	Right-handed alpha
Helix 112	AM4	B	829	839	Right-handed alpha
Helix 113	AM5	B	904	916	Right-handed alpha
Helix 114	AM6	B	917	947	Right-handed alpha
Helix 115	AM7	B	955	1002	Right-handed alpha
Helix 116	AM8	B	1005	1011	Right-handed alpha
Helix 117	AM9	B	1015	1030	Right-handed alpha
Helix 118	AN1	B	1030	1056	Right-handed alpha
Helix 119	AN2	B	1056	1062	Right-handed alpha
Helix 120	AN3	B	1063	1090	Right-handed alpha
Helix 121	AN4	B	1092	1097	Right-handed alpha
Helix 122	AN5	B	1097	1105	Right-handed alpha
Helix 123	AN6	B	1105	1111	Right-handed alpha
Helix 124	AN7	B	1112	1114	Right-handed 310
Helix 125	AN8	B	1117	1128	Right-handed alpha
Helix 126	AN9	B	1130	1135	Right-handed alpha
Helix 127	AO1	B	1135	1143	Right-handed alpha
Helix 128	AO2	B	1148	1157	Right-handed alpha
Helix 129	AO3	B	1158	1166	Right-handed alpha
Helix 130	AO4	B	1171	1175	Right-handed 310
Helix 131	AO5	B	1177	1187	Right-handed alpha
Helix 132	AO6	B	1188	1202	Right-handed alpha
Helix 133	AO7	B	1207	1218	Right-handed alpha
Helix 134	AO8	B	1283	1290	Right-handed alpha
Helix 135	AO9	B	1311	1317	Right-handed alpha
Helix 136	AP1	B	1332	1338	Right-handed alpha
Helix 137	AP2	B	1344	1355	Right-handed alpha
Helix 138	AP3	B	1357	1363	Right-handed alpha
Helix 139	AP4	B	1366	1370	Right-handed 310
Helix 140	AP5	B	1380	1396	Right-handed alpha
Helix 141	AP6	B	1410	1425	Right-handed alpha
Helix 142	AP7	B	1459	1466	Right-handed alpha
Helix 143	AP8	B	1469	1477	Right-handed alpha
Helix 144	AP9	B	1479	1498	Right-handed alpha

There are 10 sheets in PDB entry 9WFQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	67	first strand
Strand 2	A	198	199	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	637	639	first strand
Strand 2	A	614	616	anti-parallel
Strand 3	A	675	676	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	680	683	first strand
Strand 2	A	760	764	parallel
Strand 3	A	791	795	parallel
Strand 4	A	644	649	parallel
Strand 5	A	807	812	parallel
Strand 6	A	815	820	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1265	1266	first strand
Strand 2	A	1242	1248	anti-parallel
Strand 3	A	1297	1300	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1399	1403	first strand
Strand 2	A	1429	1433	parallel
Strand 3	A	1271	1275	parallel
Strand 4	A	1446	1449	parallel
Strand 5	A	1454	1458	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	67	first strand
Strand 2	B	198	199	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	637	639	first strand
Strand 2	B	614	616	anti-parallel
Strand 3	B	675	676	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	680	683	first strand
Strand 2	B	760	764	parallel
Strand 3	B	791	795	parallel
Strand 4	B	644	649	parallel
Strand 5	B	807	812	parallel
Strand 6	B	815	820	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1265	1266	first strand
Strand 2	B	1242	1248	anti-parallel
Strand 3	B	1297	1300	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1399	1403	first strand
Strand 2	B	1429	1433	parallel
Strand 3	B	1271	1275	parallel
Strand 4	B	1446	1449	parallel
Strand 5	B	1454	1458	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9WFQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9WFQ