Analysis of interatomic Contacts of Structural Units in PDB entry:
9WFZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9WFZ entry

There are 19 chains in PDB entry 9WFZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
I	MET 1	ASP 36
K	LYS 10	ARG 46
T	MET 1	ILE 29
V	LEU 8	TYR 137
Y	VAL 18	LEU 46
A	ASN 12	ALA 344
B	PRO 270	ARG 505
C	THR 24	ASP 473
D	LEU 18	LEU 352
E	THR 4	GLN 82
F	TYR 13	ARG 45
J	PRO 9	LEU 40
L	LEU 12	ASN 37
M	MET 1	LEU 22
O	TYR 7	TYR 240
U	LEU 9	LYS 104
X	ILE 12	GLN 38
Z	MET 1	VAL 61
b	GLY 35	ALA 99

There are107 helices in PDB entry 9WFZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	I	1	24	Right-handed alpha
Helix 2	AA2	I	26	30	Right-handed 310
Helix 3	AA3	K	12	17	Right-handed 310
Helix 4	AA4	K	18	25	Right-handed alpha
Helix 5	AA5	K	27	43	Right-handed alpha
Helix 6	AA6	T	2	23	Right-handed alpha
Helix 7	AA7	V	22	37	Right-handed alpha
Helix 8	AA8	V	37	42	Right-handed alpha
Helix 9	AA9	V	43	45	Right-handed 310
Helix 10	AB1	V	55	62	Right-handed alpha
Helix 11	AB2	V	68	78	Right-handed alpha
Helix 12	AB3	V	101	105	Right-handed 310
Helix 13	AB4	V	108	127	Right-handed alpha
Helix 14	AB5	V	128	130	Right-handed 310
Helix 15	AB6	V	132	137	Right-handed 310
Helix 16	AB7	Y	19	42	Right-handed alpha
Helix 17	AB8	A	14	22	Right-handed alpha
Helix 18	AB9	A	30	55	Right-handed alpha
Helix 19	AC1	A	70	74	Right-handed 310
Helix 20	AC2	A	95	99	Right-handed 310
Helix 21	AC3	A	101	108	Right-handed alpha
Helix 22	AC4	A	109	137	Right-handed alpha
Helix 23	AC5	A	142	159	Right-handed alpha
Helix 24	AC6	A	159	166	Right-handed alpha
Helix 25	AC7	A	167	171	Right-handed 310
Helix 26	AC8	A	176	191	Right-handed alpha
Helix 27	AC9	A	192	194	Right-handed 310
Helix 28	AD1	A	195	222	Right-handed alpha
Helix 29	AD2	A	232	237	Right-handed 310
Helix 30	AD3	A	247	259	Right-handed alpha
Helix 31	AD4	A	260	264	Right-handed 310
Helix 32	AD5	A	267	294	Right-handed alpha
Helix 33	AD6	A	316	332	Right-handed alpha
Helix 34	AD7	B	271	277	Right-handed alpha
Helix 35	AD8	B	278	289	Right-handed alpha
Helix 36	AD9	B	297	303	Right-handed alpha
Helix 37	AE1	B	314	322	Right-handed 310
Helix 38	AE2	B	330	335	Right-handed alpha
Helix 39	AE3	B	391	396	Right-handed alpha
Helix 40	AE4	B	416	425	Right-handed alpha
Helix 41	AE5	B	449	450	Right-handed 310
Helix 42	AE6	B	452	454	Right-handed 310
Helix 43	AE7	B	487	492	Right-handed 310
Helix 44	AE8	C	27	32	Right-handed alpha
Helix 45	AE9	C	34	43	Right-handed 310
Helix 46	AF1	C	45	74	Right-handed alpha
Helix 47	AF2	C	80	84	Right-handed 310
Helix 48	AF3	C	88	94	Right-handed alpha
Helix 49	AF4	C	108	135	Right-handed alpha
Helix 50	AF5	C	222	227	Right-handed 310
Helix 51	AF6	C	267	293	Right-handed alpha
Helix 52	AF7	C	298	303	Right-handed alpha
Helix 53	AF8	C	305	324	Right-handed alpha
Helix 54	AF9	C	327	331	Right-handed 310
Helix 55	AG1	C	353	359	Right-handed 310
Helix 56	AG2	C	366	368	Right-handed 310
Helix 57	AG3	C	376	383	Right-handed alpha
Helix 58	AG4	C	385	397	Right-handed alpha
Helix 59	AG5	C	421	454	Right-handed alpha
Helix 60	AG6	C	460	464	Right-handed 310
Helix 61	AG7	C	465	469	Right-handed 310
Helix 62	AG8	D	30	55	Right-handed alpha
Helix 63	AG9	D	66	70	Right-handed 310
Helix 64	AH1	D	82	86	Right-handed 310
Helix 65	AH2	D	100	107	Right-handed alpha
Helix 66	AH3	D	108	137	Right-handed alpha
Helix 67	AH4	D	140	158	Right-handed alpha
Helix 68	AH5	D	158	164	Right-handed alpha
Helix 69	AH6	D	166	170	Right-handed 310
Helix 70	AH7	D	175	190	Right-handed alpha
Helix 71	AH8	D	191	193	Right-handed 310
Helix 72	AH9	D	194	221	Right-handed alpha
Helix 73	AI1	D	230	235	Right-handed 310
Helix 74	AI2	D	245	258	Right-handed alpha
Helix 75	AI3	D	263	290	Right-handed alpha
Helix 76	AI4	D	298	308	Right-handed alpha
Helix 77	AI5	D	313	324	Right-handed alpha
Helix 78	AI6	D	326	328	Right-handed 310
Helix 79	AI7	D	329	334	Right-handed alpha
Helix 80	AI8	D	335	338	Right-handed 310
Helix 81	AI9	D	342	346	Right-handed 310
Helix 82	AJ1	E	9	15	Right-handed alpha
Helix 83	AJ2	E	19	20	Right-handed 310
Helix 84	AJ3	E	22	22	Right-handed 310
Helix 85	AJ4	E	23	38	Right-handed alpha
Helix 86	AJ5	E	44	48	Right-handed alpha
Helix 87	AJ6	E	71	82	Right-handed alpha
Helix 88	AJ7	F	17	41	Right-handed alpha
Helix 89	AJ8	J	10	32	Right-handed alpha
Helix 90	AJ9	L	14	37	Right-handed alpha
Helix 91	AK1	M	6	12	Right-handed alpha
Helix 92	AK2	O	14	18	Right-handed 310
Helix 93	AK3	O	179	181	Right-handed 310
Helix 94	AK4	O	182	187	Right-handed alpha
Helix 95	AK5	U	12	18	Right-handed alpha
Helix 96	AK6	U	19	23	Right-handed 310
Helix 97	AK7	U	31	38	Right-handed 310
Helix 98	AK8	U	43	52	Right-handed alpha
Helix 99	AK9	U	57	64	Right-handed 310
Helix 100	AL1	U	68	78	Right-handed alpha
Helix 101	AL2	U	92	96	Right-handed 310
Helix 102	AL3	X	24	25	Right-handed alpha
Helix 103	AL4	X	27	35	Right-handed alpha
Helix 104	AL5	Z	2	28	Right-handed alpha
Helix 105	AL6	Z	29	31	Right-handed 310
Helix 106	AL7	Z	32	37	Right-handed alpha
Helix 107	AL8	b	92	98	Right-handed alpha

There are 11 sheets in PDB entry 9WFZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	9	11	first strand
Strand 2	V	18	20	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	82	first strand
Strand 2	A	174	175	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	297	298	first strand
Strand 2	C	402	403	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	377	380	first strand
Strand 2	B	369	371	anti-parallel
Strand 3	B	353	356	anti-parallel
Strand 4	B	336	347	anti-parallel
Strand 5	B	398	402	anti-parallel
Strand 6	B	409	411	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	377	380	first strand
Strand 2	B	369	371	anti-parallel
Strand 3	B	353	356	anti-parallel
Strand 4	B	336	347	anti-parallel
Strand 5	B	429	433	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	341	343	first strand
Strand 2	C	349	351	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	370	371	first strand
Strand 2	C	374	375	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	77	78	first strand
Strand 2	D	173	174	anti-parallel

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There are 10 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	65	67	first strand
Strand 2	O	43	53	anti-parallel
Strand 3	O	232	238	anti-parallel
Strand 4	O	215	220	anti-parallel
Strand 5	O	193	199	anti-parallel
Strand 6	O	142	148	anti-parallel
Strand 7	O	126	128	anti-parallel
Strand 8	O	93	101	anti-parallel
Strand 9	O	78	87	anti-parallel
Strand 10	O	43	53	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	69	70	first strand
Strand 2	O	103	109	anti-parallel
Strand 3	O	115	121	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	25	26	first strand
Strand 2	U	82	83	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9WFZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9WFZ