Analysis of interatomic Contacts of Structural Units in PDB entry:
9WH1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9WH1 entry

There are 3 chains in PDB entry 9WH1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 242ASN 525
B
 LYS 3LEU 853
C
 A 5 A 14
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 60 helices in PDB entry 9WH1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
282 290Right-handed alpha
Helix 2
AA2
A
291 297Right-handed alpha
Helix 3
AA3
A
298 306Right-handed alpha
Helix 4
AA4
A
309 325Right-handed alpha
Helix 5
AA5
A
330 343Right-handed alpha
Helix 6
AA6
A
385 401Right-handed alpha
Helix 7
AA7
A
402 407Right-handed 310
Helix 8
AA8
A
414 418Right-handed 310
Helix 9
AA9
A
421 433Right-handed alpha
Helix 10
AB1
A
468 488Right-handed alpha
Helix 11
AB2
A
488 495Right-handed alpha
Helix 12
AB3
A
496 498Right-handed 310
Helix 13
AB4
A
511 523Right-handed alpha
Helix 14
AB5
B
4 14Right-handed alpha
Helix 15
AB6
B
15 34Right-handed alpha
Helix 16
AB7
B
43 59Right-handed alpha
Helix 17
AB8
B
64 77Right-handed alpha
Helix 18
AB9
B
85 98Right-handed alpha
Helix 19
AC1
B
99 103Right-handed 310
Helix 20
AC2
B
110 124Right-handed alpha
Helix 21
AC3
B
125 129Right-handed 310
Helix 22
AC4
B
133 146Right-handed alpha
Helix 23
AC5
B
158 173Right-handed alpha
Helix 24
AC6
B
184 199Right-handed alpha
Helix 25
AC7
B
199 206Right-handed alpha
Helix 26
AC8
B
232 242Right-handed alpha
Helix 27
AC9
B
255 261Right-handed 310
Helix 28
AD1
B
267 283Right-handed alpha
Helix 29
AD2
B
299 305Right-handed alpha
Helix 30
AD3
B
347 353Right-handed alpha
Helix 31
AD4
B
355 367Right-handed alpha
Helix 32
AD5
B
376 391Right-handed alpha
Helix 33
AD6
B
399 413Right-handed alpha
Helix 34
AD7
B
417 423Right-handed alpha
Helix 35
AD8
B
435 448Right-handed alpha
Helix 36
AD9
B
458 463Right-handed alpha
Helix 37
AE1
B
487 500Right-handed alpha
Helix 38
AE2
B
525 530Right-handed 310
Helix 39
AE3
B
538 546Right-handed alpha
Helix 40
AE4
B
546 559Right-handed alpha
Helix 41
AE5
B
568 585Right-handed alpha
Helix 42
AE6
B
588 591Right-handed 310
Helix 43
AE7
B
592 601Right-handed alpha
Helix 44
AE8
B
604 615Right-handed alpha
Helix 45
AE9
B
621 628Right-handed alpha
Helix 46
AF1
B
632 645Right-handed alpha
Helix 47
AF2
B
647 651Right-handed 310
Helix 48
AF3
B
656 672Right-handed alpha
Helix 49
AF4
B
672 677Right-handed alpha
Helix 50
AF5
B
685 699Right-handed alpha
Helix 51
AF6
B
702 712Right-handed alpha
Helix 52
AF7
B
732 750Right-handed alpha
Helix 53
AF8
B
753 771Right-handed alpha
Helix 54
AF9
B
778 786Right-handed alpha
Helix 55
AG1
B
789 799Right-handed alpha
Helix 56
AG2
B
801 810Right-handed alpha
Helix 57
AG3
B
812 816Right-handed 310
Helix 58
AG4
B
822 825Right-handed 310
Helix 59
AG5
B
831 839Right-handed alpha
Helix 60
AG6
B
845 850Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 9WH1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 271first strand
Strand 2
A
503 509parallel
Strand 3
A
447 454parallel
Strand 4
A
377 382parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
348 350first strand
Strand 2
A
363 367anti-parallel
Strand 3
A
373 375anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
209 211first strand
Strand 2
B
227 231parallel
Strand 3
B
177 181parallel
Strand 4
B
248 253parallel
Strand 5
B
287 293parallel
Strand 6
B
149 153parallel
Strand 7
B
313 314parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
321 325first strand
Strand 2
B
510 516parallel
Strand 3
B
470 474parallel
Strand 4
B
370 373parallel
Strand 5
B
453 456parallel
Strand 6
B
427 430parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
334 337first strand
Strand 2
B
342 345anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
716 717first strand
Strand 2
B
726 727anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
818 821first strand
Strand 2
B
826 830anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il