Analysis of interatomic Contacts of Structural Units in PDB entry:
9WHD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9WHD entry

There are 2 chains in PDB entry 9WHD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 25	GLU 762
B	THR 25	SER 765

There are 62 helices in PDB entry 9WHD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	25	47	Right-handed alpha
Helix 2	AA2	A	51	73	Right-handed alpha
Helix 3	AA3	A	74	84	Right-handed alpha
Helix 4	AA4	A	85	90	Right-handed alpha
Helix 5	AA5	A	91	123	Right-handed alpha
Helix 6	AA6	A	135	137	Right-handed 310
Helix 7	AA7	A	165	173	Right-handed alpha
Helix 8	AA8	A	181	185	Right-handed 310
Helix 9	AA9	A	193	203	Right-handed alpha
Helix 10	AB1	A	219	227	Right-handed alpha
Helix 11	AB2	A	228	231	Right-handed 310
Helix 12	AB3	A	245	260	Right-handed alpha
Helix 13	AB4	A	261	263	Right-handed 310
Helix 14	AB5	A	266	270	Right-handed 310
Helix 15	AB6	A	298	314	Right-handed alpha
Helix 16	AB7	A	315	324	Right-handed alpha
Helix 17	AB8	A	329	333	Right-handed 310
Helix 18	AB9	A	342	344	Right-handed 310
Helix 19	AC1	A	346	375	Right-handed alpha
Helix 20	AC2	A	386	391	Right-handed alpha
Helix 21	AC3	A	399	406	Right-handed alpha
Helix 22	AC4	A	436	450	Right-handed alpha
Helix 23	AC5	A	475	488	Right-handed alpha
Helix 24	AC6	A	517	520	Right-handed 310
Helix 25	AC7	A	521	538	Right-handed alpha
Helix 26	AC8	A	538	548	Right-handed alpha
Helix 27	AC9	A	557	564	Right-handed alpha
Helix 28	AD1	A	566	579	Right-handed alpha
Helix 29	AD2	A	589	596	Right-handed alpha
Helix 30	AD3	A	597	601	Right-handed 310
Helix 31	AD4	A	613	626	Right-handed alpha
Helix 32	AD5	A	661	677	Right-handed alpha
Helix 33	AD6	B	26	47	Right-handed alpha
Helix 34	AD7	B	51	74	Right-handed alpha
Helix 35	AD8	B	74	84	Right-handed alpha
Helix 36	AD9	B	91	123	Right-handed alpha
Helix 37	AE1	B	135	137	Right-handed 310
Helix 38	AE2	B	165	170	Right-handed alpha
Helix 39	AE3	B	181	185	Right-handed 310
Helix 40	AE4	B	193	203	Right-handed alpha
Helix 41	AE5	B	219	227	Right-handed alpha
Helix 42	AE6	B	228	233	Right-handed alpha
Helix 43	AE7	B	245	264	Right-handed alpha
Helix 44	AE8	B	266	270	Right-handed 310
Helix 45	AE9	B	298	314	Right-handed alpha
Helix 46	AF1	B	315	324	Right-handed alpha
Helix 47	AF2	B	329	333	Right-handed 310
Helix 48	AF3	B	342	344	Right-handed 310
Helix 49	AF4	B	346	372	Right-handed alpha
Helix 50	AF5	B	386	392	Right-handed alpha
Helix 51	AF6	B	399	406	Right-handed alpha
Helix 52	AF7	B	436	450	Right-handed alpha
Helix 53	AF8	B	475	488	Right-handed alpha
Helix 54	AF9	B	517	520	Right-handed 310
Helix 55	AG1	B	521	538	Right-handed alpha
Helix 56	AG2	B	538	548	Right-handed alpha
Helix 57	AG3	B	557	564	Right-handed alpha
Helix 58	AG4	B	566	579	Right-handed alpha
Helix 59	AG5	B	589	596	Right-handed alpha
Helix 60	AG6	B	597	601	Right-handed 310
Helix 61	AG7	B	613	625	Right-handed alpha
Helix 62	AG8	B	661	677	Right-handed alpha

There are 16 sheets in PDB entry 9WHD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	139	141	first strand
Strand 2	A	146	148	anti-parallel
Strand 3	A	153	154	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	156	159	first strand
Strand 2	A	490	495	parallel
Strand 3	A	455	460	parallel
Strand 4	A	410	412	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	180	first strand
Strand 2	A	209	213	parallel
Strand 3	A	273	277	parallel
Strand 4	A	380	383	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	284	285	first strand
Strand 2	A	339	340	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	420	422	first strand
Strand 2	A	425	427	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	586	588	first strand
Strand 2	A	552	555	parallel
Strand 3	A	603	605	parallel
Strand 4	A	629	632	parallel
Strand 5	A	655	658	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	682	687	first strand
Strand 2	A	719	725	anti-parallel
Strand 3	A	746	749	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	695	701	first strand
Strand 2	A	707	713	anti-parallel
Strand 3	A	754	761	anti-parallel
Strand 4	A	732	736	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	139	141	first strand
Strand 2	B	146	148	anti-parallel
Strand 3	B	153	154	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	159	first strand
Strand 2	B	490	495	parallel
Strand 3	B	455	460	parallel
Strand 4	B	410	412	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	176	180	first strand
Strand 2	B	209	213	parallel
Strand 3	B	273	277	parallel
Strand 4	B	380	383	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	284	285	first strand
Strand 2	B	339	340	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	420	422	first strand
Strand 2	B	425	427	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	586	588	first strand
Strand 2	B	552	555	parallel
Strand 3	B	603	606	parallel
Strand 4	B	629	632	parallel
Strand 5	B	655	658	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	682	687	first strand
Strand 2	B	719	725	anti-parallel
Strand 3	B	746	749	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	695	701	first strand
Strand 2	B	707	713	anti-parallel
Strand 3	B	754	760	anti-parallel
Strand 4	B	733	736	anti-parallel
Strand 5	B	741	743	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9WHD

Analysis of interatomic Contacts of Structural Units in PDB entry:
9WHD