Analysis of interatomic Contacts of Structural Units in PDB entry:
9WHU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9WHU entry

There are 9 chains in PDB entry 9WHU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 242	ASN 525
B	LYS 3	LEU 853
D	ALA 242	ASN 525
E	LYS 3	LEU 853
F	A 7	A 14
G	ALA 242	ASN 525
H	LYS 3	LEU 853
I	A 6	A 14
C	A 6	A 15

There are171 helices in PDB entry 9WHU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	282	295	Right-handed alpha
Helix 2	AA2	A	298	307	Right-handed alpha
Helix 3	AA3	A	314	325	Right-handed alpha
Helix 4	AA4	A	330	343	Right-handed alpha
Helix 5	AA5	A	386	401	Right-handed alpha
Helix 6	AA6	A	414	418	Right-handed 310
Helix 7	AA7	A	426	433	Right-handed alpha
Helix 8	AA8	A	465	467	Right-handed 310
Helix 9	AA9	A	468	488	Right-handed alpha
Helix 10	AB1	A	488	495	Right-handed alpha
Helix 11	AB2	A	496	498	Right-handed 310
Helix 12	AB3	A	511	523	Right-handed alpha
Helix 13	AB4	B	4	14	Right-handed alpha
Helix 14	AB5	B	15	34	Right-handed alpha
Helix 15	AB6	B	43	59	Right-handed alpha
Helix 16	AB7	B	62	77	Right-handed alpha
Helix 17	AB8	B	78	83	Right-handed 310
Helix 18	AB9	B	86	98	Right-handed alpha
Helix 19	AC1	B	110	124	Right-handed alpha
Helix 20	AC2	B	133	145	Right-handed alpha
Helix 21	AC3	B	154	157	Right-handed 310
Helix 22	AC4	B	158	174	Right-handed alpha
Helix 23	AC5	B	184	199	Right-handed alpha
Helix 24	AC6	B	199	207	Right-handed alpha
Helix 25	AC7	B	232	240	Right-handed alpha
Helix 26	AC8	B	256	261	Right-handed 310
Helix 27	AC9	B	267	283	Right-handed alpha
Helix 28	AD1	B	299	304	Right-handed alpha
Helix 29	AD2	B	348	353	Right-handed alpha
Helix 30	AD3	B	355	367	Right-handed alpha
Helix 31	AD4	B	376	391	Right-handed alpha
Helix 32	AD5	B	399	413	Right-handed alpha
Helix 33	AD6	B	417	424	Right-handed alpha
Helix 34	AD7	B	435	449	Right-handed alpha
Helix 35	AD8	B	458	464	Right-handed alpha
Helix 36	AD9	B	487	500	Right-handed alpha
Helix 37	AE1	B	526	531	Right-handed alpha
Helix 38	AE2	B	538	546	Right-handed alpha
Helix 39	AE3	B	546	558	Right-handed alpha
Helix 40	AE4	B	566	569	Right-handed 310
Helix 41	AE5	B	570	585	Right-handed alpha
Helix 42	AE6	B	592	601	Right-handed alpha
Helix 43	AE7	B	603	618	Right-handed alpha
Helix 44	AE8	B	621	628	Right-handed alpha
Helix 45	AE9	B	632	645	Right-handed alpha
Helix 46	AF1	B	646	650	Right-handed 310
Helix 47	AF2	B	656	672	Right-handed alpha
Helix 48	AF3	B	672	677	Right-handed alpha
Helix 49	AF4	B	683	699	Right-handed alpha
Helix 50	AF5	B	702	712	Right-handed alpha
Helix 51	AF6	B	732	750	Right-handed alpha
Helix 52	AF7	B	753	770	Right-handed alpha
Helix 53	AF8	B	778	785	Right-handed alpha
Helix 54	AF9	B	789	799	Right-handed alpha
Helix 55	AG1	B	801	811	Right-handed alpha
Helix 56	AG2	B	811	816	Right-handed alpha
Helix 57	AG3	B	822	825	Right-handed 310
Helix 58	AG4	B	831	838	Right-handed alpha
Helix 59	AG5	B	843	850	Right-handed alpha
Helix 60	AG6	D	282	297	Right-handed alpha
Helix 61	AG7	D	298	306	Right-handed alpha
Helix 62	AG8	D	313	325	Right-handed alpha
Helix 63	AG9	D	329	343	Right-handed alpha
Helix 64	AH1	D	385	401	Right-handed alpha
Helix 65	AH2	D	414	418	Right-handed 310
Helix 66	AH3	D	421	433	Right-handed alpha
Helix 67	AH4	D	461	465	Right-handed 310
Helix 68	AH5	D	468	488	Right-handed alpha
Helix 69	AH6	D	488	495	Right-handed alpha
Helix 70	AH7	D	496	498	Right-handed 310
Helix 71	AH8	D	511	522	Right-handed alpha
Helix 72	AH9	E	4	14	Right-handed alpha
Helix 73	AI1	E	15	36	Right-handed alpha
Helix 74	AI2	E	43	59	Right-handed alpha
Helix 75	AI3	E	63	77	Right-handed alpha
Helix 76	AI4	E	84	97	Right-handed alpha
Helix 77	AI5	E	110	124	Right-handed alpha
Helix 78	AI6	E	125	129	Right-handed 310
Helix 79	AI7	E	133	145	Right-handed alpha
Helix 80	AI8	E	154	157	Right-handed 310
Helix 81	AI9	E	158	173	Right-handed alpha
Helix 82	AJ1	E	184	199	Right-handed alpha
Helix 83	AJ2	E	199	206	Right-handed alpha
Helix 84	AJ3	E	232	241	Right-handed alpha
Helix 85	AJ4	E	255	261	Right-handed 310
Helix 86	AJ5	E	267	283	Right-handed alpha
Helix 87	AJ6	E	299	304	Right-handed alpha
Helix 88	AJ7	E	355	367	Right-handed alpha
Helix 89	AJ8	E	376	391	Right-handed alpha
Helix 90	AJ9	E	399	413	Right-handed alpha
Helix 91	AK1	E	417	424	Right-handed alpha
Helix 92	AK2	E	435	448	Right-handed alpha
Helix 93	AK3	E	458	461	Right-handed 310
Helix 94	AK4	E	487	500	Right-handed alpha
Helix 95	AK5	E	526	530	Right-handed 310
Helix 96	AK6	E	538	546	Right-handed alpha
Helix 97	AK7	E	546	559	Right-handed alpha
Helix 98	AK8	E	568	585	Right-handed alpha
Helix 99	AK9	E	588	591	Right-handed 310
Helix 100	AL1	E	592	601	Right-handed alpha
Helix 101	AL2	E	604	617	Right-handed alpha
Helix 102	AL3	E	621	628	Right-handed alpha
Helix 103	AL4	E	632	645	Right-handed alpha
Helix 104	AL5	E	646	651	Right-handed alpha
Helix 105	AL6	E	656	671	Right-handed alpha
Helix 106	AL7	E	672	677	Right-handed alpha
Helix 107	AL8	E	683	698	Right-handed alpha
Helix 108	AL9	E	702	714	Right-handed alpha
Helix 109	AM1	E	732	749	Right-handed alpha
Helix 110	AM2	E	753	770	Right-handed alpha
Helix 111	AM3	E	778	784	Right-handed alpha
Helix 112	AM4	E	789	799	Right-handed alpha
Helix 113	AM5	E	801	811	Right-handed alpha
Helix 114	AM6	E	811	816	Right-handed alpha
Helix 115	AM7	E	831	839	Right-handed alpha
Helix 116	AM8	E	845	852	Right-handed alpha
Helix 117	AM9	G	280	297	Right-handed alpha
Helix 118	AN1	G	298	307	Right-handed alpha
Helix 119	AN2	G	309	326	Right-handed alpha
Helix 120	AN3	G	330	343	Right-handed alpha
Helix 121	AN4	G	385	401	Right-handed alpha
Helix 122	AN5	G	402	407	Right-handed 310
Helix 123	AN6	G	421	433	Right-handed alpha
Helix 124	AN7	G	468	488	Right-handed alpha
Helix 125	AN8	G	488	496	Right-handed alpha
Helix 126	AN9	G	511	523	Right-handed alpha
Helix 127	AO1	H	4	14	Right-handed alpha
Helix 128	AO2	H	15	36	Right-handed alpha
Helix 129	AO3	H	43	59	Right-handed alpha
Helix 130	AO4	H	64	77	Right-handed alpha
Helix 131	AO5	H	78	84	Right-handed 310
Helix 132	AO6	H	85	97	Right-handed alpha
Helix 133	AO7	H	110	124	Right-handed alpha
Helix 134	AO8	H	125	129	Right-handed 310
Helix 135	AO9	H	133	145	Right-handed alpha
Helix 136	AP1	H	154	157	Right-handed 310
Helix 137	AP2	H	158	173	Right-handed alpha
Helix 138	AP3	H	184	199	Right-handed alpha
Helix 139	AP4	H	199	206	Right-handed alpha
Helix 140	AP5	H	232	241	Right-handed alpha
Helix 141	AP6	H	256	261	Right-handed 310
Helix 142	AP7	H	267	283	Right-handed alpha
Helix 143	AP8	H	299	305	Right-handed alpha
Helix 144	AP9	H	347	352	Right-handed alpha
Helix 145	AQ1	H	355	367	Right-handed alpha
Helix 146	AQ2	H	376	391	Right-handed alpha
Helix 147	AQ3	H	401	413	Right-handed alpha
Helix 148	AQ4	H	417	423	Right-handed alpha
Helix 149	AQ5	H	435	448	Right-handed alpha
Helix 150	AQ6	H	458	463	Right-handed alpha
Helix 151	AQ7	H	487	500	Right-handed alpha
Helix 152	AQ8	H	525	530	Right-handed 310
Helix 153	AQ9	H	538	546	Right-handed alpha
Helix 154	AR1	H	546	559	Right-handed alpha
Helix 155	AR2	H	568	585	Right-handed alpha
Helix 156	AR3	H	592	601	Right-handed alpha
Helix 157	AR4	H	604	615	Right-handed alpha
Helix 158	AR5	H	621	628	Right-handed alpha
Helix 159	AR6	H	632	645	Right-handed alpha
Helix 160	AR7	H	656	671	Right-handed alpha
Helix 161	AR8	H	683	698	Right-handed alpha
Helix 162	AR9	H	702	711	Right-handed alpha
Helix 163	AS1	H	732	751	Right-handed alpha
Helix 164	AS2	H	753	770	Right-handed alpha
Helix 165	AS3	H	778	786	Right-handed alpha
Helix 166	AS4	H	789	799	Right-handed alpha
Helix 167	AS5	H	801	811	Right-handed alpha
Helix 168	AS6	H	813	816	Right-handed 310
Helix 169	AS7	H	822	825	Right-handed 310
Helix 170	AS8	H	831	839	Right-handed alpha
Helix 171	AS9	H	845	853	Right-handed alpha

There are 18 sheets in PDB entry 9WHU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	350	first strand
Strand 2	A	363	364	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	379	383	first strand
Strand 2	A	449	454	parallel
Strand 3	A	504	509	parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	209	211	first strand
Strand 2	B	227	231	parallel
Strand 3	B	178	181	parallel
Strand 4	B	250	254	parallel
Strand 5	B	287	293	parallel
Strand 6	B	149	153	parallel
Strand 7	B	313	314	parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	344	345	first strand
Strand 2	B	334	337	anti-parallel
Strand 3	B	321	325	anti-parallel
Strand 4	B	510	516	parallel
Strand 5	B	470	474	parallel
Strand 6	B	370	373	parallel
Strand 7	B	453	456	parallel
Strand 8	B	427	430	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	716	717	first strand
Strand 2	B	726	727	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	818	821	first strand
Strand 2	B	826	830	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	269	271	first strand
Strand 2	D	503	509	parallel
Strand 3	D	448	454	parallel
Strand 4	D	377	382	parallel
Strand 5	D	362	364	anti-parallel
Strand 6	D	348	351	anti-parallel
Strand 7	D	410	411	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	209	211	first strand
Strand 2	E	227	231	parallel
Strand 3	E	177	181	parallel
Strand 4	E	248	253	parallel
Strand 5	E	287	293	parallel
Strand 6	E	149	153	parallel
Strand 7	E	312	314	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	321	325	first strand
Strand 2	E	510	516	parallel
Strand 3	E	470	474	parallel
Strand 4	E	370	373	parallel
Strand 5	E	453	456	parallel
Strand 6	E	427	430	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	334	337	first strand
Strand 2	E	342	345	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	716	717	first strand
Strand 2	E	726	727	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	818	821	first strand
Strand 2	E	826	830	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	270	271	first strand
Strand 2	G	503	509	parallel
Strand 3	G	446	454	parallel
Strand 4	G	376	382	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	366	367	first strand
Strand 2	G	373	374	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	209	211	first strand
Strand 2	H	227	231	parallel
Strand 3	H	177	181	parallel
Strand 4	H	248	254	parallel
Strand 5	H	287	293	parallel
Strand 6	H	149	153	parallel
Strand 7	H	312	314	parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	321	325	first strand
Strand 2	H	510	514	parallel
Strand 3	H	470	473	parallel
Strand 4	H	370	373	parallel
Strand 5	H	453	456	parallel
Strand 6	H	427	430	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	334	337	first strand
Strand 2	H	342	345	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	818	821	first strand
Strand 2	H	826	830	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9WHU

Analysis of interatomic Contacts of Structural Units in PDB entry:
9WHU