Analysis of interatomic Contacts of Structural Units in PDB entry:
9WHY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9WHY entry

There are 10 chains in PDB entry 9WHY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 4HIS 321
B
 GLU 4HIS 321
C
 LEU 5HIS 321
D
 LEU 5HIS 321
E
 G 37 C 95
F
 G 111 C 176
G
 T 10 C 37
H
 G 1 A 29
I
 G 5 C 33
J
 G 13 C 40
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 59 helices in PDB entry 9WHY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
36 50Right-handed alpha
Helix 2
AA2
A
66 77Right-handed alpha
Helix 3
AA3
A
84 95Right-handed alpha
Helix 4
AA4
A
101 117Right-handed alpha
Helix 5
AA5
A
125 155Right-handed alpha
Helix 6
AA6
A
159 187Right-handed alpha
Helix 7
AA7
A
188 200Right-handed alpha
Helix 8
AA8
A
205 217Right-handed alpha
Helix 9
AA9
A
224 232Right-handed alpha
Helix 10
AB1
A
256 262Right-handed alpha
Helix 11
AB2
A
263 274Right-handed alpha
Helix 12
AB3
A
274 286Right-handed alpha
Helix 13
AB4
A
290 313Right-handed alpha
Helix 14
AB5
A
317 321Right-handed 310
Helix 15
AB6
B
36 50Right-handed alpha
Helix 16
AB7
B
63 65Right-handed 310
Helix 17
AB8
B
66 76Right-handed alpha
Helix 18
AB9
B
84 94Right-handed alpha
Helix 19
AC1
B
105 117Right-handed alpha
Helix 20
AC2
B
125 155Right-handed alpha
Helix 21
AC3
B
156 158Right-handed 310
Helix 22
AC4
B
159 187Right-handed alpha
Helix 23
AC5
B
188 200Right-handed alpha
Helix 24
AC6
B
205 217Right-handed alpha
Helix 25
AC7
B
224 232Right-handed alpha
Helix 26
AC8
B
256 263Right-handed alpha
Helix 27
AC9
B
263 274Right-handed alpha
Helix 28
AD1
B
274 287Right-handed alpha
Helix 29
AD2
B
290 313Right-handed alpha
Helix 30
AD3
B
317 321Right-handed 310
Helix 31
AD4
C
36 50Right-handed alpha
Helix 32
AD5
C
66 76Right-handed alpha
Helix 33
AD6
C
84 95Right-handed alpha
Helix 34
AD7
C
101 117Right-handed alpha
Helix 35
AD8
C
125 153Right-handed alpha
Helix 36
AD9
C
156 158Right-handed 310
Helix 37
AE1
C
159 188Right-handed alpha
Helix 38
AE2
C
188 201Right-handed alpha
Helix 39
AE3
C
205 217Right-handed alpha
Helix 40
AE4
C
224 232Right-handed alpha
Helix 41
AE5
C
256 262Right-handed alpha
Helix 42
AE6
C
263 274Right-handed alpha
Helix 43
AE7
C
274 287Right-handed alpha
Helix 44
AE8
C
290 313Right-handed alpha
Helix 45
AE9
C
317 321Right-handed 310
Helix 46
AF1
D
36 50Right-handed alpha
Helix 47
AF2
D
63 65Right-handed 310
Helix 48
AF3
D
66 76Right-handed alpha
Helix 49
AF4
D
84 96Right-handed alpha
Helix 50
AF5
D
105 117Right-handed alpha
Helix 51
AF6
D
125 155Right-handed alpha
Helix 52
AF7
D
159 187Right-handed alpha
Helix 53
AF8
D
188 200Right-handed alpha
Helix 54
AF9
D
205 217Right-handed alpha
Helix 55
AG1
D
224 232Right-handed alpha
Helix 56
AG2
D
256 271Right-handed alpha
Helix 57
AG3
D
274 287Right-handed alpha
Helix 58
AG4
D
290 313Right-handed alpha
Helix 59
AG5
D
317 321Right-handed 310
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There are 9 sheets in PDB entry 9WHY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 34first strand
Strand 2
A
16 22anti-parallel
Strand 3
A
6 12anti-parallel
Strand 4
A
55 60parallel
Strand 5
A
79 83parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 34first strand
Strand 2
B
16 22anti-parallel
Strand 3
B
6 12anti-parallel
Strand 4
B
55 60parallel
Strand 5
B
79 83parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
236 237first strand
Strand 2
B
250 251anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
240 241first strand
Strand 2
B
245 246anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
28 34first strand
Strand 2
C
16 22anti-parallel
Strand 3
C
6 12anti-parallel
Strand 4
C
55 60parallel
Strand 5
C
79 83parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
236 237first strand
Strand 2
C
250 251anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
28 34first strand
Strand 2
D
16 22anti-parallel
Strand 3
D
6 12anti-parallel
Strand 4
D
55 60parallel
Strand 5
D
79 83parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
236 237first strand
Strand 2
D
250 251anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
240 241first strand
Strand 2
D
245 246anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il