Analysis of interatomic Contacts of Structural Units in PDB entry:
9WIP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9WIP entry

There is 1 chain in PDB entry 9WIP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0GLU 360
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 9WIP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 16Right-handed alpha
Helix 2
AA2
A
16 24Right-handed alpha
Helix 3
AA3
A
63 65Right-handed 310
Helix 4
AA4
A
66 80Right-handed alpha
Helix 5
AA5
A
88 92Right-handed 310
Helix 6
AA6
A
93 97Right-handed 310
Helix 7
AA7
A
99 104Right-handed 310
Helix 8
AA8
A
105 111Right-handed alpha
Helix 9
AA9
A
127 137Right-handed alpha
Helix 10
AB1
A
151 166Right-handed alpha
Helix 11
AB2
A
169 177Right-handed alpha
Helix 12
AB3
A
177 183Right-handed alpha
Helix 13
AB4
A
192 199Right-handed 310
Helix 14
AB5
A
216 218Right-handed 310
Helix 15
AB6
A
219 224Right-handed alpha
Helix 16
AB7
A
228 241Right-handed alpha
Helix 17
AB8
A
242 245Right-handed 310
Helix 18
AB9
A
246 257Right-handed alpha
Helix 19
AC1
A
280 287Right-handed alpha
Helix 20
AC2
A
289 294Right-handed alpha
Helix 21
AC3
A
343 359Right-handed alpha
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There are 4 sheets in PDB entry 9WIP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 53first strand
Strand 2
A
37 47anti-parallel
Strand 3
A
27 34anti-parallel
Strand 4
A
332 338anti-parallel
Strand 5
A
321 327anti-parallel
Strand 6
A
309 316anti-parallel
Strand 7
A
273 276anti-parallel
Strand 8
A
266 268anti-parallel
Strand 9
A
261 262anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 61first strand
Strand 2
A
226 227anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 148first strand
Strand 2
A
297 298anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 203first strand
Strand 2
A
209 210anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il