Analysis of interatomic Contacts of Structural Units in PDB entry:
9WJ0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9WJ0 entry

There are 3 chains in PDB entry 9WJ0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 MET 1GLU 14
A
 GLY 3ARG 864
B
 GLY 3ASN 863
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 67 helices in PDB entry 9WJ0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
2 13Right-handed alpha
Helix 2
AA2
A
3 10Right-handed 310
Helix 3
AA3
A
74 88Right-handed alpha
Helix 4
AA4
A
98 106Right-handed alpha
Helix 5
AA5
A
125 141Right-handed alpha
Helix 6
AA6
A
198 200Right-handed 310
Helix 7
AA7
A
201 212Right-handed alpha
Helix 8
AA8
A
270 285Right-handed alpha
Helix 9
AA9
A
316 324Right-handed alpha
Helix 10
AB1
A
332 356Right-handed alpha
Helix 11
AB2
A
364 366Right-handed 310
Helix 12
AB3
A
407 425Right-handed alpha
Helix 13
AB4
A
437 450Right-handed alpha
Helix 14
AB5
A
450 471Right-handed alpha
Helix 15
AB6
A
490 505Right-handed alpha
Helix 16
AB7
A
517 522Right-handed alpha
Helix 17
AB8
A
532 543Right-handed alpha
Helix 18
AB9
A
547 558Right-handed alpha
Helix 19
AC1
A
573 584Right-handed alpha
Helix 20
AC2
A
586 596Right-handed alpha
Helix 21
AC3
A
611 626Right-handed alpha
Helix 22
AC4
A
628 648Right-handed alpha
Helix 23
AC5
A
668 683Right-handed alpha
Helix 24
AC6
A
684 700Right-handed alpha
Helix 25
AC7
A
727 743Right-handed alpha
Helix 26
AC8
A
747 756Right-handed alpha
Helix 27
AC9
A
757 760Right-handed 310
Helix 28
AD1
A
773 776Right-handed 310
Helix 29
AD2
A
777 783Right-handed alpha
Helix 30
AD3
A
788 801Right-handed alpha
Helix 31
AD4
A
815 819Right-handed 310
Helix 32
AD5
A
828 842Right-handed alpha
Helix 33
AD6
A
852 860Right-handed alpha
Helix 34
AD7
B
3 10Right-handed 310
Helix 35
AD8
B
74 88Right-handed alpha
Helix 36
AD9
B
98 106Right-handed alpha
Helix 37
AE1
B
125 140Right-handed alpha
Helix 38
AE2
B
198 200Right-handed 310
Helix 39
AE3
B
201 211Right-handed alpha
Helix 40
AE4
B
270 285Right-handed alpha
Helix 41
AE5
B
316 323Right-handed alpha
Helix 42
AE6
B
333 356Right-handed alpha
Helix 43
AE7
B
380 384Right-handed 310
Helix 44
AE8
B
407 425Right-handed alpha
Helix 45
AE9
B
438 471Right-handed alpha
Helix 46
AF1
B
491 504Right-handed alpha
Helix 47
AF2
B
517 522Right-handed alpha
Helix 48
AF3
B
524 528Right-handed 310
Helix 49
AF4
B
532 543Right-handed alpha
Helix 50
AF5
B
547 562Right-handed alpha
Helix 51
AF6
B
563 565Right-handed 310
Helix 52
AF7
B
573 584Right-handed alpha
Helix 53
AF8
B
586 597Right-handed alpha
Helix 54
AF9
B
598 600Right-handed 310
Helix 55
AG1
B
611 626Right-handed alpha
Helix 56
AG2
B
628 647Right-handed alpha
Helix 57
AG3
B
667 683Right-handed alpha
Helix 58
AG4
B
684 700Right-handed alpha
Helix 59
AG5
B
727 743Right-handed alpha
Helix 60
AG6
B
747 756Right-handed alpha
Helix 61
AG7
B
757 760Right-handed 310
Helix 62
AG8
B
771 776Right-handed 310
Helix 63
AG9
B
777 783Right-handed alpha
Helix 64
AH1
B
789 801Right-handed alpha
Helix 65
AH2
B
816 819Right-handed 310
Helix 66
AH3
B
828 842Right-handed alpha
Helix 67
AH4
B
852 860Right-handed alpha
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There are 10 sheets in PDB entry 9WJ0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 43first strand
Strand 2
A
49 54anti-parallel
Strand 3
A
93 96anti-parallel
Strand 4
A
119 121anti-parallel
Strand 5
A
62 68anti-parallel
Strand 6
A
160 166anti-parallel
Strand 7
A
153 154anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 236first strand
Strand 2
A
239 246anti-parallel
Strand 3
A
251 258anti-parallel
Strand 4
A
303 309anti-parallel
Strand 5
A
294 300anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
314 315first strand
Strand 2
A
368 370anti-parallel
Strand 3
A
376 378anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
702 705first strand
Strand 2
A
710 714anti-parallel
Strand 3
A
720 721anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
805 807first strand
Strand 2
A
810 812anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 43first strand
Strand 2
B
49 54anti-parallel
Strand 3
B
93 96anti-parallel
Strand 4
B
119 121anti-parallel
Strand 5
B
62 68anti-parallel
Strand 6
B
160 166anti-parallel
Strand 7
B
153 154anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
227 231first strand
Strand 2
B
242 246anti-parallel
Strand 3
B
251 257anti-parallel
Strand 4
B
303 309anti-parallel
Strand 5
B
294 300anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
313 315first strand
Strand 2
B
368 371anti-parallel
Strand 3
B
376 378anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
702 704first strand
Strand 2
B
711 713anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
805 806first strand
Strand 2
B
811 814anti-parallel
Strand 3
B
821 822anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il