Analysis of interatomic Contacts of Structural Units in PDB entry:
9WJK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9WJK entry

There is 1 chain in PDB entry 9WJK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 32PHE 520
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 9WJK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
36 41Right-handed alpha
Helix 2
AA2
A
43 45Right-handed 310
Helix 3
AA3
A
46 54Right-handed alpha
Helix 4
AA4
A
54 64Right-handed alpha
Helix 5
AA5
A
69 75Right-handed 310
Helix 6
AA6
A
87 91Right-handed 310
Helix 7
AA7
A
107 120Right-handed alpha
Helix 8
AA8
A
120 131Right-handed alpha
Helix 9
AA9
A
149 152Right-handed 310
Helix 10
AB1
A
190 196Right-handed alpha
Helix 11
AB2
A
207 212Right-handed alpha
Helix 12
AB3
A
245 264Right-handed alpha
Helix 13
AB4
A
286 293Right-handed 310
Helix 14
AB5
A
302 305Right-handed 310
Helix 15
AB6
A
339 353Right-handed alpha
Helix 16
AB7
A
381 391Right-handed alpha
Helix 17
AB8
A
408 418Right-handed alpha
Helix 18
AB9
A
427 436Right-handed 310
Helix 19
AC1
A
452 462Right-handed alpha
Helix 20
AC2
A
470 472Right-handed 310
Helix 21
AC3
A
488 492Right-handed 310
Helix 22
AC4
A
497 515Right-handed alpha
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There are 5 sheets in PDB entry 9WJK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 97first strand
Strand 2
A
336 337anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 189first strand
Strand 2
A
132 136anti-parallel
Strand 3
A
144 147anti-parallel
Strand 4
A
154 162anti-parallel
Strand 5
A
308 316anti-parallel
Strand 6
A
229 231parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 216first strand
Strand 2
A
183 185parallel
Strand 3
A
154 162anti-parallel
Strand 4
A
308 316anti-parallel
Strand 5
A
235 238parallel
Strand 6
A
271 274parallel
Strand 7
A
299 300parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
395 401first strand
Strand 2
A
365 371parallel
Strand 3
A
421 424parallel
Strand 4
A
441 444parallel
Strand 5
A
464 467parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
474 476first strand
Strand 2
A
494 496anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il