Analysis of interatomic Contacts of Structural Units in PDB entry:
9WJU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9WJU entry

There are 7 chains in PDB entry 9WJU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
Y	MET 1	GLY 250
Z	LYS 6	ALA 365
A	HIS 0	HIS 50
F	MET 1	ALA 247
G	LYS 7	ALA 365
S	MET 1	GLY 250
T	LYS 6	ALA 365

There are 79 helices in PDB entry 9WJU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	Y	2	23	Right-handed alpha
Helix 2	AA2	Y	29	41	Right-handed alpha
Helix 3	AA3	Y	43	59	Right-handed alpha
Helix 4	AA4	Y	71	86	Right-handed alpha
Helix 5	AA5	Y	92	97	Right-handed alpha
Helix 6	AA6	Y	97	133	Right-handed alpha
Helix 7	AA7	Y	135	164	Right-handed alpha
Helix 8	AA8	Y	167	175	Right-handed alpha
Helix 9	AA9	Y	177	189	Right-handed alpha
Helix 10	AB1	Y	191	203	Right-handed alpha
Helix 11	AB2	Y	208	219	Right-handed alpha
Helix 12	AB3	Y	225	250	Right-handed alpha
Helix 13	AB4	Z	11	23	Right-handed alpha
Helix 14	AB5	Z	35	51	Right-handed alpha
Helix 15	AB6	Z	55	65	Right-handed alpha
Helix 16	AB7	Z	76	92	Right-handed alpha
Helix 17	AB8	Z	97	121	Right-handed alpha
Helix 18	AB9	Z	123	137	Right-handed alpha
Helix 19	AC1	Z	141	168	Right-handed alpha
Helix 20	AC2	Z	170	179	Right-handed alpha
Helix 21	AC3	Z	181	204	Right-handed alpha
Helix 22	AC4	Z	287	300	Right-handed alpha
Helix 23	AC5	Z	311	320	Right-handed alpha
Helix 24	AC6	Z	322	338	Right-handed alpha
Helix 25	AC7	Z	343	362	Right-handed alpha
Helix 26	AC8	A	26	43	Right-handed alpha
Helix 27	AC9	F	2	23	Right-handed alpha
Helix 28	AD1	F	29	41	Right-handed alpha
Helix 29	AD2	F	44	59	Right-handed alpha
Helix 30	AD3	F	71	86	Right-handed alpha
Helix 31	AD4	F	92	97	Right-handed alpha
Helix 32	AD5	F	97	132	Right-handed alpha
Helix 33	AD6	F	135	164	Right-handed alpha
Helix 34	AD7	F	165	175	Right-handed alpha
Helix 35	AD8	F	177	188	Right-handed alpha
Helix 36	AD9	F	190	203	Right-handed alpha
Helix 37	AE1	F	208	219	Right-handed alpha
Helix 38	AE2	F	225	246	Right-handed alpha
Helix 39	AE3	G	11	23	Right-handed alpha
Helix 40	AE4	G	36	51	Right-handed alpha
Helix 41	AE5	G	55	65	Right-handed alpha
Helix 42	AE6	G	76	91	Right-handed alpha
Helix 43	AE7	G	99	107	Right-handed alpha
Helix 44	AE8	G	108	122	Right-handed alpha
Helix 45	AE9	G	123	137	Right-handed alpha
Helix 46	AF1	G	141	170	Right-handed alpha
Helix 47	AF2	G	172	178	Right-handed alpha
Helix 48	AF3	G	180	204	Right-handed alpha
Helix 49	AF4	G	279	283	Right-handed 310
Helix 50	AF5	G	288	300	Right-handed alpha
Helix 51	AF6	G	311	320	Right-handed alpha
Helix 52	AF7	G	322	340	Right-handed alpha
Helix 53	AF8	G	343	362	Right-handed alpha
Helix 54	AF9	S	2	20	Right-handed alpha
Helix 55	AG1	S	29	41	Right-handed alpha
Helix 56	AG2	S	44	58	Right-handed alpha
Helix 57	AG3	S	71	86	Right-handed alpha
Helix 58	AG4	S	91	97	Right-handed alpha
Helix 59	AG5	S	98	132	Right-handed alpha
Helix 60	AG6	S	135	164	Right-handed alpha
Helix 61	AG7	S	165	174	Right-handed alpha
Helix 62	AG8	S	177	189	Right-handed alpha
Helix 63	AG9	S	191	203	Right-handed alpha
Helix 64	AH1	S	208	219	Right-handed alpha
Helix 65	AH2	S	225	250	Right-handed alpha
Helix 66	AH3	T	11	23	Right-handed alpha
Helix 67	AH4	T	35	43	Right-handed alpha
Helix 68	AH5	T	43	49	Right-handed alpha
Helix 69	AH6	T	55	64	Right-handed alpha
Helix 70	AH7	T	76	91	Right-handed alpha
Helix 71	AH8	T	97	121	Right-handed alpha
Helix 72	AH9	T	123	137	Right-handed alpha
Helix 73	AI1	T	141	170	Right-handed alpha
Helix 74	AI2	T	172	178	Right-handed alpha
Helix 75	AI3	T	180	204	Right-handed alpha
Helix 76	AI4	T	288	300	Right-handed alpha
Helix 77	AI5	T	311	320	Right-handed alpha
Helix 78	AI6	T	322	339	Right-handed alpha
Helix 79	AI7	T	343	363	Right-handed alpha

There are 5 sheets in PDB entry 9WJU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	267	268	first strand
Strand 2	Z	252	258	anti-parallel
Strand 3	Z	237	246	anti-parallel
Strand 4	Z	229	232	anti-parallel
Strand 5	Z	275	278	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	13	first strand
Strand 2	A	20	22	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	263	264	first strand
Strand 2	G	252	258	anti-parallel
Strand 3	G	237	246	anti-parallel
Strand 4	G	229	231	anti-parallel
Strand 5	G	276	278	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	229	231	first strand
Strand 2	T	276	278	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	239	246	first strand
Strand 2	T	252	257	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9WJU

Analysis of interatomic Contacts of Structural Units in PDB entry:
9WJU