Analysis of interatomic Contacts of Structural Units in PDB entry:
9WK1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9WK1 entry

There are 8 chains in PDB entry 9WK1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	MET 1	HIS 343
A	MET 1	ARG 341
B	MET 2	HIS 343
C	MET 1	ARG 341
E	MET 1	HIS 343
F	MET 1	HIS 343
G	MET 2	HIS 343
H	MET 2	HIS 342

There are133 helices in PDB entry 9WK1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	31	46	Right-handed alpha
Helix 2	AA2	D	55	58	Right-handed 310
Helix 3	AA3	D	59	73	Right-handed alpha
Helix 4	AA4	D	74	78	Right-handed 310
Helix 5	AA5	D	98	114	Right-handed alpha
Helix 6	AA6	D	131	145	Right-handed alpha
Helix 7	AA7	D	157	172	Right-handed alpha
Helix 8	AA8	D	187	191	Right-handed 310
Helix 9	AA9	D	192	200	Right-handed alpha
Helix 10	AB1	D	213	217	Right-handed 310
Helix 11	AB2	D	228	232	Right-handed alpha
Helix 12	AB3	D	233	238	Right-handed alpha
Helix 13	AB4	D	241	262	Right-handed alpha
Helix 14	AB5	D	264	276	Right-handed alpha
Helix 15	AB6	D	288	298	Right-handed alpha
Helix 16	AB7	D	304	315	Right-handed alpha
Helix 17	AB8	D	322	327	Right-handed 310
Helix 18	AB9	D	330	334	Right-handed 310
Helix 19	AC1	D	335	340	Right-handed alpha
Helix 20	AC2	A	31	46	Right-handed alpha
Helix 21	AC3	A	55	58	Right-handed 310
Helix 22	AC4	A	59	72	Right-handed alpha
Helix 23	AC5	A	73	78	Right-handed 310
Helix 24	AC6	A	98	114	Right-handed alpha
Helix 25	AC7	A	131	146	Right-handed alpha
Helix 26	AC8	A	157	172	Right-handed alpha
Helix 27	AC9	A	187	191	Right-handed 310
Helix 28	AD1	A	192	200	Right-handed alpha
Helix 29	AD2	A	244	261	Right-handed alpha
Helix 30	AD3	A	264	276	Right-handed alpha
Helix 31	AD4	A	288	300	Right-handed alpha
Helix 32	AD5	A	304	315	Right-handed alpha
Helix 33	AD6	A	322	327	Right-handed 310
Helix 34	AD7	A	330	335	Right-handed alpha
Helix 35	AD8	A	336	340	Right-handed 310
Helix 36	AD9	B	31	46	Right-handed alpha
Helix 37	AE1	B	55	58	Right-handed 310
Helix 38	AE2	B	59	73	Right-handed alpha
Helix 39	AE3	B	74	78	Right-handed 310
Helix 40	AE4	B	98	114	Right-handed alpha
Helix 41	AE5	B	131	145	Right-handed alpha
Helix 42	AE6	B	157	172	Right-handed alpha
Helix 43	AE7	B	187	191	Right-handed 310
Helix 44	AE8	B	192	201	Right-handed alpha
Helix 45	AE9	B	213	217	Right-handed 310
Helix 46	AF1	B	241	261	Right-handed alpha
Helix 47	AF2	B	264	276	Right-handed alpha
Helix 48	AF3	B	288	300	Right-handed alpha
Helix 49	AF4	B	304	315	Right-handed alpha
Helix 50	AF5	B	322	326	Right-handed 310
Helix 51	AF6	B	330	335	Right-handed alpha
Helix 52	AF7	B	336	340	Right-handed 310
Helix 53	AF8	C	31	46	Right-handed alpha
Helix 54	AF9	C	55	58	Right-handed 310
Helix 55	AG1	C	59	73	Right-handed alpha
Helix 56	AG2	C	74	78	Right-handed 310
Helix 57	AG3	C	98	113	Right-handed alpha
Helix 58	AG4	C	131	145	Right-handed alpha
Helix 59	AG5	C	157	172	Right-handed alpha
Helix 60	AG6	C	187	191	Right-handed 310
Helix 61	AG7	C	192	200	Right-handed alpha
Helix 62	AG8	C	242	261	Right-handed alpha
Helix 63	AG9	C	264	276	Right-handed alpha
Helix 64	AH1	C	288	300	Right-handed alpha
Helix 65	AH2	C	304	315	Right-handed alpha
Helix 66	AH3	C	322	326	Right-handed 310
Helix 67	AH4	C	330	334	Right-handed 310
Helix 68	AH5	C	335	340	Right-handed alpha
Helix 69	AH6	E	31	46	Right-handed alpha
Helix 70	AH7	E	55	58	Right-handed 310
Helix 71	AH8	E	59	73	Right-handed alpha
Helix 72	AH9	E	74	78	Right-handed 310
Helix 73	AI1	E	98	113	Right-handed alpha
Helix 74	AI2	E	131	145	Right-handed alpha
Helix 75	AI3	E	157	170	Right-handed alpha
Helix 76	AI4	E	187	191	Right-handed 310
Helix 77	AI5	E	192	200	Right-handed alpha
Helix 78	AI6	E	227	232	Right-handed alpha
Helix 79	AI7	E	233	238	Right-handed alpha
Helix 80	AI8	E	241	262	Right-handed alpha
Helix 81	AI9	E	264	274	Right-handed alpha
Helix 82	AJ1	E	288	298	Right-handed alpha
Helix 83	AJ2	E	304	315	Right-handed alpha
Helix 84	AJ3	E	322	327	Right-handed 310
Helix 85	AJ4	E	330	335	Right-handed alpha
Helix 86	AJ5	F	31	46	Right-handed alpha
Helix 87	AJ6	F	59	73	Right-handed alpha
Helix 88	AJ7	F	74	78	Right-handed 310
Helix 89	AJ8	F	98	114	Right-handed alpha
Helix 90	AJ9	F	131	145	Right-handed alpha
Helix 91	AK1	F	157	172	Right-handed alpha
Helix 92	AK2	F	187	191	Right-handed 310
Helix 93	AK3	F	192	200	Right-handed alpha
Helix 94	AK4	F	213	217	Right-handed 310
Helix 95	AK5	F	243	262	Right-handed alpha
Helix 96	AK6	F	264	276	Right-handed alpha
Helix 97	AK7	F	288	300	Right-handed alpha
Helix 98	AK8	F	304	315	Right-handed alpha
Helix 99	AK9	F	322	327	Right-handed alpha
Helix 100	AL1	F	330	335	Right-handed alpha
Helix 101	AL2	F	335	340	Right-handed alpha
Helix 102	AL3	G	31	46	Right-handed alpha
Helix 103	AL4	G	55	58	Right-handed 310
Helix 104	AL5	G	59	73	Right-handed alpha
Helix 105	AL6	G	74	78	Right-handed 310
Helix 106	AL7	G	98	114	Right-handed alpha
Helix 107	AL8	G	131	146	Right-handed alpha
Helix 108	AL9	G	157	172	Right-handed alpha
Helix 109	AM1	G	187	191	Right-handed 310
Helix 110	AM2	G	192	200	Right-handed alpha
Helix 111	AM3	G	213	217	Right-handed 310
Helix 112	AM4	G	228	232	Right-handed alpha
Helix 113	AM5	G	241	261	Right-handed alpha
Helix 114	AM6	G	264	276	Right-handed alpha
Helix 115	AM7	G	288	298	Right-handed alpha
Helix 116	AM8	G	304	315	Right-handed alpha
Helix 117	AM9	G	322	327	Right-handed 310
Helix 118	AN1	G	330	334	Right-handed 310
Helix 119	AN2	G	335	339	Right-handed 310
Helix 120	AN3	H	31	46	Right-handed alpha
Helix 121	AN4	H	55	58	Right-handed 310
Helix 122	AN5	H	59	73	Right-handed alpha
Helix 123	AN6	H	74	78	Right-handed 310
Helix 124	AN7	H	98	114	Right-handed alpha
Helix 125	AN8	H	131	145	Right-handed alpha
Helix 126	AN9	H	157	172	Right-handed alpha
Helix 127	AO1	H	188	200	Right-handed alpha
Helix 128	AO2	H	246	261	Right-handed alpha
Helix 129	AO3	H	264	276	Right-handed alpha
Helix 130	AO4	H	288	299	Right-handed alpha
Helix 131	AO5	H	304	315	Right-handed alpha
Helix 132	AO6	H	330	335	Right-handed alpha
Helix 133	AO7	H	336	340	Right-handed 310

There are 16 sheets in PDB entry 9WK1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	6	first strand
Strand 2	D	13	14	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	17	20	first strand
Strand 2	D	49	51	parallel
Strand 3	D	79	84	parallel
Strand 4	D	118	123	parallel
Strand 5	D	148	153	parallel
Strand 6	D	177	178	parallel
Strand 7	D	203	206	parallel
Strand 8	D	281	284	parallel
Strand 9	D	17	20	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	6	first strand
Strand 2	A	13	14	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	20	first strand
Strand 2	A	49	51	parallel
Strand 3	A	79	82	parallel
Strand 4	A	118	121	parallel
Strand 5	A	148	154	parallel
Strand 6	A	177	179	parallel
Strand 7	A	203	206	parallel
Strand 8	A	279	284	parallel
Strand 9	A	17	20	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	6	first strand
Strand 2	B	13	14	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	20	first strand
Strand 2	B	49	51	parallel
Strand 3	B	79	84	parallel
Strand 4	B	118	123	parallel
Strand 5	B	148	153	parallel
Strand 6	B	177	178	parallel
Strand 7	B	203	207	parallel
Strand 8	B	281	284	parallel
Strand 9	B	17	20	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	6	first strand
Strand 2	C	13	14	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	17	20	first strand
Strand 2	C	49	51	parallel
Strand 3	C	79	84	parallel
Strand 4	C	118	123	parallel
Strand 5	C	148	154	parallel
Strand 6	C	177	179	parallel
Strand 7	C	203	206	parallel
Strand 8	C	281	284	parallel
Strand 9	C	17	20	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	6	first strand
Strand 2	E	13	14	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	17	20	first strand
Strand 2	E	49	51	parallel
Strand 3	E	79	82	parallel
Strand 4	E	118	121	parallel
Strand 5	E	148	153	parallel
Strand 6	E	177	178	parallel
Strand 7	E	203	207	parallel
Strand 8	E	281	284	parallel
Strand 9	E	17	20	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	5	6	first strand
Strand 2	F	13	14	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	17	20	first strand
Strand 2	F	49	51	parallel
Strand 3	F	79	82	parallel
Strand 4	F	118	121	parallel
Strand 5	F	148	154	parallel
Strand 6	F	177	179	parallel
Strand 7	F	203	207	parallel
Strand 8	F	281	284	parallel
Strand 9	F	17	20	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	5	6	first strand
Strand 2	G	13	14	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	148	151	first strand
Strand 2	G	118	121	parallel
Strand 3	G	79	82	parallel
Strand 4	G	49	51	parallel
Strand 5	G	17	20	parallel
Strand 6	G	281	284	parallel
Strand 7	G	203	206	parallel
Strand 8	G	177	178	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	5	6	first strand
Strand 2	H	13	14	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	17	20	first strand
Strand 2	H	49	51	parallel
Strand 3	H	79	82	parallel
Strand 4	H	118	121	parallel
Strand 5	H	148	154	parallel
Strand 6	H	177	179	parallel
Strand 7	H	203	206	parallel
Strand 8	H	281	284	parallel
Strand 9	H	17	20	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9WK1

Analysis of interatomic Contacts of Structural Units in PDB entry:
9WK1