Analysis of interatomic Contacts of Structural Units in PDB entry:
9WLC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9WLC entry

There are 4 chains in PDB entry 9WLC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 43	ARG 258
B	GLU 46	LEU 261
C	SER 42	GLU 260
D	SER 45	LYS 263

There are 17 helices in PDB entry 9WLC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	126	130	Right-handed 310
Helix 2	AA2	A	168	173	Right-handed alpha
Helix 3	AA3	A	230	235	Right-handed alpha
Helix 4	AA4	B	73	77	Right-handed 310
Helix 5	AA5	B	119	121	Right-handed 310
Helix 6	AA6	B	132	136	Right-handed 310
Helix 7	AA7	B	207	209	Right-handed 310
Helix 8	AA8	B	210	214	Right-handed 310
Helix 9	AA9	B	237	239	Right-handed 310
Helix 10	AB1	C	126	130	Right-handed 310
Helix 11	AB2	C	168	174	Right-handed alpha
Helix 12	AB3	C	230	235	Right-handed alpha
Helix 13	AB4	D	73	77	Right-handed 310
Helix 14	AB5	D	106	111	Right-handed alpha
Helix 15	AB6	D	119	121	Right-handed 310
Helix 16	AB7	D	132	136	Right-handed 310
Helix 17	AB8	D	251	254	Right-handed 310

There are 22 sheets in PDB entry 9WLC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	49	first strand
Strand 2	A	61	67	anti-parallel
Strand 3	A	117	122	anti-parallel
Strand 4	A	109	114	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	55	first strand
Strand 2	A	149	153	parallel
Strand 3	A	131	137	anti-parallel
Strand 4	A	80	85	anti-parallel
Strand 5	A	92	96	anti-parallel
Strand 6	A	100	101	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	55	first strand
Strand 2	A	149	153	parallel
Strand 3	A	131	137	anti-parallel
Strand 4	A	144	145	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	165	first strand
Strand 2	A	176	186	anti-parallel
Strand 3	A	220	229	anti-parallel
Strand 4	A	206	210	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	200	202	first strand
Strand 2	A	192	197	anti-parallel
Strand 3	A	238	244	anti-parallel
Strand 4	A	252	257	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	51	first strand
Strand 2	B	63	70	anti-parallel
Strand 3	B	123	128	anti-parallel
Strand 4	B	113	118	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	57	first strand
Strand 2	B	158	162	parallel
Strand 3	B	137	145	anti-parallel
Strand 4	B	78	85	anti-parallel
Strand 5	B	89	96	anti-parallel
Strand 6	B	103	105	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	57	first strand
Strand 2	B	158	162	parallel
Strand 3	B	137	145	anti-parallel
Strand 4	B	149	154	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	171	175	first strand
Strand 2	B	186	196	anti-parallel
Strand 3	B	225	235	anti-parallel
Strand 4	B	215	216	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	171	175	first strand
Strand 2	B	186	196	anti-parallel
Strand 3	B	225	235	anti-parallel
Strand 4	B	220	222	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	202	205	first strand
Strand 2	B	245	250	anti-parallel
Strand 3	B	255	260	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	46	49	first strand
Strand 2	C	61	67	anti-parallel
Strand 3	C	117	122	anti-parallel
Strand 4	C	109	114	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	56	first strand
Strand 2	C	149	154	parallel
Strand 3	C	131	137	anti-parallel
Strand 4	C	80	85	anti-parallel
Strand 5	C	92	96	anti-parallel
Strand 6	C	100	101	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	56	first strand
Strand 2	C	149	154	parallel
Strand 3	C	131	137	anti-parallel
Strand 4	C	144	145	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	161	165	first strand
Strand 2	C	176	186	anti-parallel
Strand 3	C	220	229	anti-parallel
Strand 4	C	206	210	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	200	202	first strand
Strand 2	C	192	197	anti-parallel
Strand 3	C	238	245	anti-parallel
Strand 4	C	248	257	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	48	51	first strand
Strand 2	D	63	70	anti-parallel
Strand 3	D	123	128	anti-parallel
Strand 4	D	113	118	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	55	57	first strand
Strand 2	D	158	162	parallel
Strand 3	D	137	145	anti-parallel
Strand 4	D	78	85	anti-parallel
Strand 5	D	89	96	anti-parallel
Strand 6	D	103	105	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	55	57	first strand
Strand 2	D	158	162	parallel
Strand 3	D	137	145	anti-parallel
Strand 4	D	149	154	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	171	175	first strand
Strand 2	D	186	196	anti-parallel
Strand 3	D	225	235	anti-parallel
Strand 4	D	213	216	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	171	175	first strand
Strand 2	D	186	196	anti-parallel
Strand 3	D	225	235	anti-parallel
Strand 4	D	220	222	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	202	206	first strand
Strand 2	D	245	250	anti-parallel
Strand 3	D	255	260	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9WLC

Analysis of interatomic Contacts of Structural Units in PDB entry:
9WLC