Analysis of interatomic Contacts of Structural Units in PDB entry:
9WLR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9WLR entry

There are 6 chains in PDB entry 9WLR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	THR 10	ALA 476
E	ALA 19	ALA 476
F	ARG 20	ALA 476
G	ALA 19	ALA 476
H	THR 10	ALA 476
I	ALA 19	ALA 476

There are 38 helices in PDB entry 9WLR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	234	240	Right-handed alpha
Helix 2	AA2	D	327	329	Right-handed 310
Helix 3	AA3	D	388	399	Right-handed alpha
Helix 4	AA4	D	399	406	Right-handed alpha
Helix 5	AA5	D	443	447	Right-handed 310
Helix 6	AA6	D	462	465	Right-handed 310
Helix 7	AA7	D	466	476	Right-handed alpha
Helix 8	AA8	E	234	240	Right-handed alpha
Helix 9	AA9	E	388	399	Right-handed alpha
Helix 10	AB1	E	400	403	Right-handed 310
Helix 11	AB2	E	443	448	Right-handed 310
Helix 12	AB3	E	462	465	Right-handed 310
Helix 13	AB4	E	466	476	Right-handed alpha
Helix 14	AB5	F	222	227	Right-handed alpha
Helix 15	AB6	F	234	240	Right-handed alpha
Helix 16	AB7	F	327	329	Right-handed 310
Helix 17	AB8	F	388	399	Right-handed alpha
Helix 18	AB9	F	399	405	Right-handed alpha
Helix 19	AC1	F	466	476	Right-handed alpha
Helix 20	AC2	G	210	215	Right-handed alpha
Helix 21	AC3	G	234	240	Right-handed alpha
Helix 22	AC4	G	306	308	Right-handed 310
Helix 23	AC5	G	327	329	Right-handed 310
Helix 24	AC6	G	388	399	Right-handed alpha
Helix 25	AC7	G	400	406	Right-handed alpha
Helix 26	AC8	G	466	475	Right-handed alpha
Helix 27	AC9	H	80	85	Right-handed 310
Helix 28	AD1	H	234	240	Right-handed alpha
Helix 29	AD2	H	306	308	Right-handed 310
Helix 30	AD3	H	327	329	Right-handed 310
Helix 31	AD4	H	388	399	Right-handed alpha
Helix 32	AD5	H	399	406	Right-handed alpha
Helix 33	AD6	H	466	475	Right-handed alpha
Helix 34	AD7	I	222	226	Right-handed 310
Helix 35	AD8	I	234	240	Right-handed alpha
Helix 36	AD9	I	388	399	Right-handed alpha
Helix 37	AE1	I	400	407	Right-handed alpha
Helix 38	AE2	I	466	475	Right-handed alpha

There are 39 sheets in PDB entry 9WLR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	38	first strand
Strand 2	D	377	386	anti-parallel
Strand 3	D	97	106	anti-parallel
Strand 4	D	314	315	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	44	46	first strand
Strand 2	D	367	372	anti-parallel
Strand 3	D	345	347	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	200	201	first strand
Strand 2	D	70	77	anti-parallel
Strand 3	D	331	338	anti-parallel
Strand 4	D	154	159	anti-parallel
Strand 5	D	250	263	anti-parallel
Strand 6	D	451	452	first strand

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	294	299	first strand
Strand 2	D	250	263	anti-parallel
Strand 3	D	154	159	anti-parallel
Strand 4	D	331	338	anti-parallel
Strand 5	D	70	77	anti-parallel
Strand 6	E	303	304	first strand

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	109	110	first strand
Strand 2	D	374	375	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	119	124	first strand
Strand 2	D	146	150	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	169	170	first strand
Strand 2	D	191	192	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	303	304	first strand
Strand 2	G	250	256	anti-parallel
Strand 3	G	154	159	anti-parallel
Strand 4	G	331	338	anti-parallel
Strand 5	G	72	77	anti-parallel
Strand 6	G	451	452	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	29	38	first strand
Strand 2	E	376	386	anti-parallel
Strand 3	E	97	108	anti-parallel
Strand 4	E	314	315	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	42	46	first strand
Strand 2	E	370	374	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	295	299	first strand
Strand 2	E	250	262	anti-parallel
Strand 3	E	154	159	anti-parallel
Strand 4	E	333	338	anti-parallel
Strand 5	E	72	75	anti-parallel
Strand 6	E	451	452	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	295	299	first strand
Strand 2	E	250	262	anti-parallel
Strand 3	F	303	304	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	120	124	first strand
Strand 2	E	146	149	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	169	171	first strand
Strand 2	E	190	192	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	30	38	first strand
Strand 2	F	374	386	anti-parallel
Strand 3	F	97	110	anti-parallel
Strand 4	F	314	315	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	44	46	first strand
Strand 2	F	370	372	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	72	77	first strand
Strand 2	F	331	338	anti-parallel
Strand 3	F	154	159	anti-parallel
Strand 4	F	250	262	anti-parallel
Strand 5	F	295	299	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	72	77	first strand
Strand 2	F	331	338	anti-parallel
Strand 3	F	154	159	anti-parallel
Strand 4	F	250	262	anti-parallel
Strand 5	H	303	304	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	119	124	first strand
Strand 2	F	146	150	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	169	171	first strand
Strand 2	F	190	192	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	29	38	first strand
Strand 2	G	374	384	anti-parallel
Strand 3	G	100	110	anti-parallel
Strand 4	G	314	315	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	44	46	first strand
Strand 2	G	368	372	anti-parallel
Strand 3	G	345	346	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	119	124	first strand
Strand 2	G	146	150	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	166	171	first strand
Strand 2	G	190	195	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	201	202	first strand
Strand 2	G	230	231	parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	303	304	first strand
Strand 2	H	250	263	anti-parallel
Strand 3	H	294	299	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	303	304	first strand
Strand 2	H	250	263	anti-parallel
Strand 3	H	154	159	anti-parallel
Strand 4	H	331	338	anti-parallel
Strand 5	H	72	77	anti-parallel
Strand 6	H	451	452	parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	29	38	first strand
Strand 2	H	370	386	anti-parallel
Strand 3	H	42	46	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	29	38	first strand
Strand 2	H	370	386	anti-parallel
Strand 3	H	97	110	anti-parallel
Strand 4	H	314	315	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	119	124	first strand
Strand 2	H	146	150	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	166	171	first strand
Strand 2	H	190	195	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	201	202	first strand
Strand 2	H	230	231	parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	346	347	first strand
Strand 2	H	367	368	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	30	38	first strand
Strand 2	I	377	386	anti-parallel
Strand 3	I	97	105	anti-parallel
Strand 4	I	326	327	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	42	46	first strand
Strand 2	I	370	375	anti-parallel
Strand 3	I	109	110	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	250	255	first strand
Strand 2	I	154	159	anti-parallel
Strand 3	I	331	338	anti-parallel
Strand 4	I	73	77	anti-parallel
Strand 5	I	451	452	parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	119	124	first strand
Strand 2	I	146	150	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	166	171	first strand
Strand 2	I	190	195	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	257	262	first strand
Strand 2	I	295	299	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9WLR

Analysis of interatomic Contacts of Structural Units in PDB entry:
9WLR