Analysis of interatomic Contacts of Structural Units in PDB entry:
9WM0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9WM0 entry

There are 4 chains in PDB entry 9WM0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 693
B
 T 0 T 27
C
 G 1 A 34
D
 C 1 C 7
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 9WM0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 14Right-handed 310
Helix 2
AA2
A
18 27Right-handed alpha
Helix 3
AA3
A
32 38Right-handed alpha
Helix 4
AA4
A
52 56Right-handed 310
Helix 5
AA5
A
100 107Right-handed alpha
Helix 6
AA6
A
159 176Right-handed alpha
Helix 7
AA7
A
184 189Right-handed alpha
Helix 8
AA8
A
193 203Right-handed alpha
Helix 9
AA9
A
210 216Right-handed alpha
Helix 10
AB1
A
218 239Right-handed alpha
Helix 11
AB2
A
255 265Right-handed alpha
Helix 12
AB3
A
270 285Right-handed alpha
Helix 13
AB4
A
301 315Right-handed alpha
Helix 14
AB5
A
326 342Right-handed alpha
Helix 15
AB6
A
343 345Right-handed 310
Helix 16
AB7
A
356 369Right-handed alpha
Helix 17
AB8
A
379 383Right-handed 310
Helix 18
AB9
A
398 402Right-handed 310
Helix 19
AC1
A
403 414Right-handed alpha
Helix 20
AC2
A
431 441Right-handed alpha
Helix 21
AC3
A
467 481Right-handed alpha
Helix 22
AC4
A
503 515Right-handed alpha
Helix 23
AC5
A
528 541Right-handed alpha
Helix 24
AC6
A
551 555Right-handed 310
Helix 25
AC7
A
570 573Right-handed 310
Helix 26
AC8
A
574 584Right-handed alpha
Helix 27
AC9
A
603 616Right-handed alpha
Helix 28
AD1
A
618 631Right-handed alpha
Helix 29
AD2
A
654 656Right-handed 310
Helix 30
AD3
A
657 672Right-handed alpha
Helix 31
AD4
A
672 684Right-handed alpha
Helix 32
AD5
A
687 693Right-handed 310
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There are 4 sheets in PDB entry 9WM0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 45first strand
Strand 2
A
149 151anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 121first strand
Strand 2
A
126 129anti-parallel
Strand 3
A
91 96parallel
Strand 4
A
80 86anti-parallel
Strand 5
A
61 74anti-parallel
Strand 6
A
112 118anti-parallel
Strand 7
A
132 136anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
348 351first strand
Strand 2
A
374 377parallel
Strand 3
A
319 323parallel
Strand 4
A
391 396parallel
Strand 5
A
422 427parallel
Strand 6
A
291 295parallel
Strand 7
A
444 447parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
458 464first strand
Strand 2
A
592 598parallel
Strand 3
A
562 568parallel
Strand 4
A
485 489parallel
Strand 5
A
546 549parallel
Strand 6
A
520 523parallel
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