Analysis of interatomic Contacts of Structural Units in PDB entry:
9WMD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9WMD entry

There is 1 chain in PDB entry 9WMD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1THR 775
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 9WMD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
37 48Right-handed alpha
Helix 2
AA2
A
48 54Right-handed alpha
Helix 3
AA3
A
105 126Right-handed alpha
Helix 4
AA4
A
184 188Right-handed 310
Helix 5
AA5
A
197 202Right-handed alpha
Helix 6
AA6
A
293 301Right-handed alpha
Helix 7
AA7
A
306 322Right-handed alpha
Helix 8
AA8
A
354 356Right-handed 310
Helix 9
AA9
A
366 369Right-handed 310
Helix 10
AB1
A
370 383Right-handed alpha
Helix 11
AB2
A
404 423Right-handed alpha
Helix 12
AB3
A
441 457Right-handed alpha
Helix 13
AB4
A
474 489Right-handed alpha
Helix 14
AB5
A
500 506Right-handed alpha
Helix 15
AB6
A
524 546Right-handed alpha
Helix 16
AB7
A
604 624Right-handed alpha
Helix 17
AB8
A
640 656Right-handed alpha
Helix 18
AB9
A
735 748Right-handed alpha
Helix 19
AC1
A
761 772Right-handed alpha
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There are 8 sheets in PDB entry 9WMD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 132first strand
Strand 2
A
137 140anti-parallel
Strand 3
A
151 163anti-parallel
Strand 4
A
169 181anti-parallel
Strand 5
A
3 11anti-parallel
Strand 6
A
334 342anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
278 281first strand
Strand 2
A
264 269anti-parallel
Strand 3
A
215 225anti-parallel
Strand 4
A
205 208anti-parallel
Strand 5
A
285 289anti-parallel
Strand 6
A
169 181anti-parallel
Strand 7
A
3 11anti-parallel
Strand 8
A
681 683anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 62first strand
Strand 2
A
65 71anti-parallel
Strand 3
A
21 26anti-parallel
Strand 4
A
88 97anti-parallel
Strand 5
A
79 81anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
326 327first strand
Strand 2
A
330 331anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
358 359first strand
Strand 2
A
351 352anti-parallel
Strand 3
A
552 553anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
430 434first strand
Strand 2
A
393 398parallel
Strand 3
A
461 467parallel
Strand 4
A
493 499parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
507 511first strand
Strand 2
A
519 523anti-parallel
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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
583 590first strand
Strand 2
A
571 578anti-parallel
Strand 3
A
561 568anti-parallel
Strand 4
A
629 635parallel
Strand 5
A
665 672parallel
Strand 6
A
725 732anti-parallel
Strand 7
A
706 710anti-parallel
Strand 8
A
698 701anti-parallel
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