Analysis of interatomic Contacts of Structural Units in PDB entry:
9WMF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9WMF entry

There are 4 chains in PDB entry 9WMF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLU 779
C	T 1	G 8
B	MET 1	GLU 779
D	T 1	G 8

There are 44 helices in PDB entry 9WMF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	34	54	Right-handed alpha
Helix 2	AA2	A	105	126	Right-handed alpha
Helix 3	AA3	A	184	189	Right-handed alpha
Helix 4	AA4	A	193	198	Right-handed alpha
Helix 5	AA5	A	199	202	Right-handed 310
Helix 6	AA6	A	240	250	Right-handed alpha
Helix 7	AA7	A	295	303	Right-handed 310
Helix 8	AA8	A	306	322	Right-handed alpha
Helix 9	AA9	A	354	356	Right-handed 310
Helix 10	AB1	A	365	370	Right-handed alpha
Helix 11	AB2	A	370	383	Right-handed alpha
Helix 12	AB3	A	404	423	Right-handed alpha
Helix 13	AB4	A	441	457	Right-handed alpha
Helix 14	AB5	A	474	490	Right-handed alpha
Helix 15	AB6	A	500	506	Right-handed alpha
Helix 16	AB7	A	527	546	Right-handed alpha
Helix 17	AB8	A	604	620	Right-handed alpha
Helix 18	AB9	A	640	656	Right-handed alpha
Helix 19	AC1	A	735	748	Right-handed alpha
Helix 20	AC2	A	761	771	Right-handed alpha
Helix 21	AC3	A	772	775	Right-handed 310
Helix 22	AC4	B	34	54	Right-handed alpha
Helix 23	AC5	B	105	126	Right-handed alpha
Helix 24	AC6	B	184	188	Right-handed 310
Helix 25	AC7	B	193	198	Right-handed alpha
Helix 26	AC8	B	199	202	Right-handed 310
Helix 27	AC9	B	240	250	Right-handed alpha
Helix 28	AD1	B	254	258	Right-handed 310
Helix 29	AD2	B	294	298	Right-handed 310
Helix 30	AD3	B	299	304	Right-handed alpha
Helix 31	AD4	B	306	322	Right-handed alpha
Helix 32	AD5	B	354	356	Right-handed 310
Helix 33	AD6	B	365	370	Right-handed alpha
Helix 34	AD7	B	370	383	Right-handed alpha
Helix 35	AD8	B	404	423	Right-handed alpha
Helix 36	AD9	B	441	457	Right-handed alpha
Helix 37	AE1	B	474	489	Right-handed alpha
Helix 38	AE2	B	500	506	Right-handed alpha
Helix 39	AE3	B	527	546	Right-handed alpha
Helix 40	AE4	B	604	620	Right-handed alpha
Helix 41	AE5	B	640	656	Right-handed alpha
Helix 42	AE6	B	735	748	Right-handed alpha
Helix 43	AE7	B	761	772	Right-handed alpha
Helix 44	AE8	B	773	775	Right-handed 310

There are 24 sheets in PDB entry 9WMF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	6	first strand
Strand 2	A	681	683	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	10	first strand
Strand 2	A	169	181	anti-parallel
Strand 3	A	151	163	anti-parallel
Strand 4	A	137	140	anti-parallel
Strand 5	A	130	132	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	62	first strand
Strand 2	A	65	69	anti-parallel
Strand 3	A	21	26	anti-parallel
Strand 4	A	88	97	anti-parallel
Strand 5	A	79	81	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	278	281	first strand
Strand 2	A	264	269	anti-parallel
Strand 3	A	213	225	anti-parallel
Strand 4	A	205	210	anti-parallel
Strand 5	A	285	287	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	230	233	first strand
Strand 2	A	236	239	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	326	327	first strand
Strand 2	A	330	331	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	358	359	first strand
Strand 2	A	351	352	anti-parallel
Strand 3	A	552	553	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	430	434	first strand
Strand 2	A	393	398	parallel
Strand 3	A	461	463	parallel
Strand 4	A	493	495	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	466	467	first strand
Strand 2	A	498	499	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	507	510	first strand
Strand 2	A	520	523	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	583	590	first strand
Strand 2	A	571	578	anti-parallel
Strand 3	A	561	568	anti-parallel
Strand 4	A	630	635	parallel
Strand 5	A	666	672	parallel
Strand 6	A	725	732	anti-parallel
Strand 7	A	706	710	anti-parallel
Strand 8	A	698	703	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	339	340	first strand
Strand 2	B	4	6	anti-parallel
Strand 3	B	681	683	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	10	first strand
Strand 2	B	169	172	anti-parallel
Strand 3	B	160	163	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	62	first strand
Strand 2	B	65	71	anti-parallel
Strand 3	B	21	26	anti-parallel
Strand 4	B	88	97	anti-parallel
Strand 5	B	79	81	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	130	132	first strand
Strand 2	B	137	140	anti-parallel
Strand 3	B	151	158	anti-parallel
Strand 4	B	175	181	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	278	281	first strand
Strand 2	B	264	269	anti-parallel
Strand 3	B	213	225	anti-parallel
Strand 4	B	205	210	anti-parallel
Strand 5	B	285	287	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	230	233	first strand
Strand 2	B	236	239	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	326	327	first strand
Strand 2	B	330	331	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	358	359	first strand
Strand 2	B	351	352	anti-parallel
Strand 3	B	552	553	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	430	434	first strand
Strand 2	B	393	398	parallel
Strand 3	B	461	463	parallel
Strand 4	B	493	495	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	466	467	first strand
Strand 2	B	498	499	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	507	511	first strand
Strand 2	B	519	523	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	583	586	first strand
Strand 2	B	571	578	anti-parallel
Strand 3	B	589	590	anti-parallel

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There are 8 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	583	586	first strand
Strand 2	B	571	578	anti-parallel
Strand 3	B	561	568	anti-parallel
Strand 4	B	630	635	parallel
Strand 5	B	666	672	parallel
Strand 6	B	725	732	anti-parallel
Strand 7	B	706	710	anti-parallel
Strand 8	B	698	703	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9WMF

Analysis of interatomic Contacts of Structural Units in PDB entry:
9WMF