Analysis of interatomic Contacts of Structural Units in PDB entry:
9WMI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9WMI entry

There are 6 chains in PDB entry 9WMI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ASP 250
B	ASN 2	GLY 248
C	ASN 2	ASP 250
D	ASN 2	ASP 250
E	LEU 3	GLN 644
F	MET 1	GLN 644

There are 80 helices in PDB entry 9WMI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	48	56	Right-handed alpha
Helix 2	AA2	A	72	76	Right-handed 310
Helix 3	AA3	A	77	88	Right-handed alpha
Helix 4	AA4	A	103	109	Right-handed alpha
Helix 5	AA5	A	109	114	Right-handed alpha
Helix 6	AA6	A	118	133	Right-handed alpha
Helix 7	AA7	A	135	139	Right-handed 310
Helix 8	AA8	A	147	161	Right-handed alpha
Helix 9	AA9	A	177	195	Right-handed alpha
Helix 10	AB1	A	207	212	Right-handed 310
Helix 11	AB2	A	233	248	Right-handed alpha
Helix 12	AB3	B	49	56	Right-handed alpha
Helix 13	AB4	B	77	88	Right-handed alpha
Helix 14	AB5	B	103	109	Right-handed alpha
Helix 15	AB6	B	109	114	Right-handed alpha
Helix 16	AB7	B	118	133	Right-handed alpha
Helix 17	AB8	B	135	139	Right-handed 310
Helix 18	AB9	B	147	161	Right-handed alpha
Helix 19	AC1	B	177	196	Right-handed alpha
Helix 20	AC2	B	205	210	Right-handed alpha
Helix 21	AC3	B	232	247	Right-handed alpha
Helix 22	AC4	C	77	88	Right-handed alpha
Helix 23	AC5	C	103	109	Right-handed alpha
Helix 24	AC6	C	109	115	Right-handed alpha
Helix 25	AC7	C	118	133	Right-handed alpha
Helix 26	AC8	C	142	146	Right-handed 310
Helix 27	AC9	C	147	162	Right-handed alpha
Helix 28	AD1	C	177	193	Right-handed alpha
Helix 29	AD2	C	232	248	Right-handed alpha
Helix 30	AD3	D	47	56	Right-handed alpha
Helix 31	AD4	D	72	76	Right-handed 310
Helix 32	AD5	D	77	88	Right-handed alpha
Helix 33	AD6	D	103	109	Right-handed alpha
Helix 34	AD7	D	109	115	Right-handed alpha
Helix 35	AD8	D	118	134	Right-handed alpha
Helix 36	AD9	D	135	139	Right-handed 310
Helix 37	AE1	D	147	161	Right-handed alpha
Helix 38	AE2	D	177	194	Right-handed alpha
Helix 39	AE3	D	205	210	Right-handed alpha
Helix 40	AE4	D	233	248	Right-handed alpha
Helix 41	AE5	E	4	12	Right-handed alpha
Helix 42	AE6	E	19	40	Right-handed alpha
Helix 43	AE7	E	53	85	Right-handed alpha
Helix 44	AE8	E	88	96	Right-handed alpha
Helix 45	AE9	E	98	128	Right-handed alpha
Helix 46	AF1	E	128	137	Right-handed alpha
Helix 47	AF2	E	151	160	Right-handed alpha
Helix 48	AF3	E	162	175	Right-handed alpha
Helix 49	AF4	E	199	205	Right-handed alpha
Helix 50	AF5	E	205	218	Right-handed alpha
Helix 51	AF6	E	229	246	Right-handed alpha
Helix 52	AF7	E	248	258	Right-handed alpha
Helix 53	AF8	E	258	264	Right-handed alpha
Helix 54	AF9	E	266	279	Right-handed alpha
Helix 55	AG1	E	282	307	Right-handed alpha
Helix 56	AG2	E	521	551	Right-handed alpha
Helix 57	AG3	E	553	566	Right-handed alpha
Helix 58	AG4	E	573	582	Right-handed alpha
Helix 59	AG5	E	583	586	Right-handed 310
Helix 60	AG6	E	587	605	Right-handed alpha
Helix 61	AG7	E	616	644	Right-handed alpha
Helix 62	AG8	F	3	13	Right-handed alpha
Helix 63	AG9	F	18	40	Right-handed alpha
Helix 64	AH1	F	52	86	Right-handed alpha
Helix 65	AH2	F	87	96	Right-handed alpha
Helix 66	AH3	F	98	131	Right-handed alpha
Helix 67	AH4	F	131	136	Right-handed alpha
Helix 68	AH5	F	151	167	Right-handed alpha
Helix 69	AH6	F	167	175	Right-handed alpha
Helix 70	AH7	F	199	217	Right-handed alpha
Helix 71	AH8	F	224	246	Right-handed alpha
Helix 72	AH9	F	246	258	Right-handed alpha
Helix 73	AI1	F	258	263	Right-handed alpha
Helix 74	AI2	F	266	279	Right-handed alpha
Helix 75	AI3	F	281	306	Right-handed alpha
Helix 76	AI4	F	523	552	Right-handed alpha
Helix 77	AI5	F	553	567	Right-handed alpha
Helix 78	AI6	F	570	609	Right-handed alpha
Helix 79	AI7	F	613	617	Right-handed 310
Helix 80	AI8	F	618	644	Right-handed alpha

There are 10 sheets in PDB entry 9WMI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	33	first strand
Strand 2	A	2	10	anti-parallel
Strand 3	A	63	68	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	14	first strand
Strand 2	A	21	23	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	89	92	first strand
Strand 2	A	166	170	parallel
Strand 3	A	199	203	parallel
Strand 4	A	38	41	parallel
Strand 5	A	214	219	parallel
Strand 6	A	222	228	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	32	first strand
Strand 2	B	4	10	anti-parallel
Strand 3	B	63	68	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	14	first strand
Strand 2	B	21	23	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	89	92	first strand
Strand 2	B	166	170	parallel
Strand 3	B	198	203	parallel
Strand 4	B	37	41	parallel
Strand 5	B	214	219	parallel
Strand 6	B	222	228	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	32	first strand
Strand 2	C	4	10	anti-parallel
Strand 3	C	63	68	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	89	92	first strand
Strand 2	C	166	170	parallel
Strand 3	C	199	202	parallel
Strand 4	C	37	41	parallel
Strand 5	C	214	219	parallel
Strand 6	C	222	228	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	21	32	first strand
Strand 2	D	4	14	anti-parallel
Strand 3	D	63	68	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	89	92	first strand
Strand 2	D	166	170	parallel
Strand 3	D	199	203	parallel
Strand 4	D	38	41	parallel
Strand 5	D	214	219	parallel
Strand 6	D	222	228	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9WMI

Analysis of interatomic Contacts of Structural Units in PDB entry:
9WMI