Analysis of interatomic Contacts of Structural Units in PDB entry:
9WN9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9WN9 entry

There are 2 chains in PDB entry 9WN9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2GLN 488
B
 GLY 2SER 489
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 9WN9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 9Right-handed alpha
Helix 2
AA2
A
15 28Right-handed alpha
Helix 3
AA3
A
33 50Right-handed alpha
Helix 4
AA4
A
82 101Right-handed alpha
Helix 5
AA5
A
102 106Right-handed 310
Helix 6
AA6
A
114 129Right-handed alpha
Helix 7
AA7
A
142 150Right-handed alpha
Helix 8
AA8
A
153 168Right-handed alpha
Helix 9
AA9
A
187 191Right-handed 310
Helix 10
AB1
A
211 218Right-handed alpha
Helix 11
AB2
A
219 226Right-handed 310
Helix 12
AB3
A
231 242Right-handed alpha
Helix 13
AB4
A
253 271Right-handed alpha
Helix 14
AB5
A
276 290Right-handed alpha
Helix 15
AB6
A
297 313Right-handed alpha
Helix 16
AB7
A
318 331Right-handed alpha
Helix 17
AB8
A
333 349Right-handed alpha
Helix 18
AB9
A
354 356Right-handed 310
Helix 19
AC1
A
357 370Right-handed alpha
Helix 20
AC2
A
370 385Right-handed alpha
Helix 21
AC3
A
402 405Right-handed 310
Helix 22
AC4
A
406 425Right-handed alpha
Helix 23
AC5
A
433 446Right-handed alpha
Helix 24
AC6
A
448 453Right-handed alpha
Helix 25
AC7
A
461 467Right-handed alpha
Helix 26
AC8
A
467 473Right-handed alpha
Helix 27
AC9
A
477 487Right-handed alpha
Helix 28
AD1
B
4 9Right-handed alpha
Helix 29
AD2
B
15 28Right-handed alpha
Helix 30
AD3
B
33 50Right-handed alpha
Helix 31
AD4
B
82 101Right-handed alpha
Helix 32
AD5
B
102 106Right-handed 310
Helix 33
AD6
B
114 129Right-handed alpha
Helix 34
AD7
B
142 150Right-handed alpha
Helix 35
AD8
B
153 168Right-handed alpha
Helix 36
AD9
B
187 191Right-handed 310
Helix 37
AE1
B
211 217Right-handed alpha
Helix 38
AE2
B
219 226Right-handed 310
Helix 39
AE3
B
231 242Right-handed alpha
Helix 40
AE4
B
253 270Right-handed alpha
Helix 41
AE5
B
276 290Right-handed alpha
Helix 42
AE6
B
297 313Right-handed alpha
Helix 43
AE7
B
318 331Right-handed alpha
Helix 44
AE8
B
333 349Right-handed alpha
Helix 45
AE9
B
357 370Right-handed alpha
Helix 46
AF1
B
370 385Right-handed alpha
Helix 47
AF2
B
402 405Right-handed 310
Helix 48
AF3
B
406 425Right-handed alpha
Helix 49
AF4
B
433 445Right-handed alpha
Helix 50
AF5
B
448 453Right-handed alpha
Helix 51
AF6
B
461 467Right-handed alpha
Helix 52
AF7
B
467 472Right-handed alpha
Helix 53
AF8
B
477 487Right-handed alpha
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There are 4 sheets in PDB entry 9WN9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 194first strand
Strand 2
A
182 186anti-parallel
Strand 3
A
174 177anti-parallel
Strand 4
A
228 229anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 248first strand
Strand 2
A
251 252anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
192 194first strand
Strand 2
B
182 186anti-parallel
Strand 3
B
174 177anti-parallel
Strand 4
B
228 229anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
246 248first strand
Strand 2
B
251 252anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il