Analysis of interatomic Contacts of Structural Units in PDB entry:
9WND

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9WND entry

There are 4 chains in PDB entry 9WND (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 79	SER 392
B	ILE 9	VAL 326
C	ASP 5	ASN 340
D	ASP 1	LYS 248

There are 32 helices in PDB entry 9WND. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	81	102	Right-handed alpha
Helix 2	AA2	A	107	127	Right-handed alpha
Helix 3	AA3	A	127	137	Right-handed alpha
Helix 4	AA4	A	144	179	Right-handed alpha
Helix 5	AA5	A	179	187	Right-handed alpha
Helix 6	AA6	A	188	208	Right-handed alpha
Helix 7	AA7	A	208	216	Right-handed alpha
Helix 8	AA8	A	217	221	Right-handed 310
Helix 9	AA9	A	231	243	Right-handed alpha
Helix 10	AB1	A	243	263	Right-handed alpha
Helix 11	AB2	A	317	348	Right-handed alpha
Helix 12	AB3	A	355	382	Right-handed alpha
Helix 13	AB4	A	384	392	Right-handed alpha
Helix 14	AB5	B	10	25	Right-handed alpha
Helix 15	AB6	B	29	44	Right-handed alpha
Helix 16	AB7	B	45	48	Right-handed 310
Helix 17	AB8	B	86	111	Right-handed alpha
Helix 18	AB9	B	173	178	Right-handed alpha
Helix 19	AC1	B	179	181	Right-handed 310
Helix 20	AC2	B	194	196	Right-handed 310
Helix 21	AC3	B	197	210	Right-handed alpha
Helix 22	AC4	B	211	215	Right-handed 310
Helix 23	AC5	B	225	236	Right-handed alpha
Helix 24	AC6	B	239	243	Right-handed 310
Helix 25	AC7	B	244	248	Right-handed 310
Helix 26	AC8	B	263	282	Right-handed alpha
Helix 27	AC9	B	302	323	Right-handed alpha
Helix 28	AD1	C	6	26	Right-handed alpha
Helix 29	AD2	C	30	36	Right-handed alpha
Helix 30	AD3	D	28	32	Right-handed 310
Helix 31	AD4	D	62	65	Right-handed 310
Helix 32	AD5	D	87	91	Right-handed 310

There are 13 sheets in PDB entry 9WND. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	156	first strand
Strand 2	B	159	165	anti-parallel
Strand 3	B	113	118	parallel
Strand 4	B	185	191	parallel
Strand 5	B	218	224	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	52	first strand
Strand 2	C	335	339	anti-parallel
Strand 3	C	327	331	anti-parallel
Strand 4	C	315	320	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	63	first strand
Strand 2	C	69	74	anti-parallel
Strand 3	C	78	83	anti-parallel
Strand 4	C	88	94	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	103	105	first strand
Strand 2	C	111	114	anti-parallel
Strand 3	C	121	125	anti-parallel
Strand 4	C	134	139	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	146	151	first strand
Strand 2	C	156	161	anti-parallel
Strand 3	C	165	170	anti-parallel
Strand 4	C	175	181	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	189	192	first strand
Strand 2	C	198	202	anti-parallel
Strand 3	C	207	212	anti-parallel
Strand 4	C	218	223	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	229	234	first strand
Strand 2	C	240	245	anti-parallel
Strand 3	C	251	254	anti-parallel
Strand 4	C	260	263	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	276	277	first strand
Strand 2	C	285	288	anti-parallel
Strand 3	C	293	297	anti-parallel
Strand 4	C	306	309	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	6	first strand
Strand 2	D	18	25	anti-parallel
Strand 3	D	78	83	anti-parallel
Strand 4	D	68	73	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	58	60	first strand
Strand 2	D	45	51	anti-parallel
Strand 3	D	33	39	anti-parallel
Strand 4	D	93	99	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	155	160	first strand
Strand 2	D	211	216	anti-parallel
Strand 3	D	203	208	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	194	195	first strand
Strand 2	D	186	190	anti-parallel
Strand 3	D	174	179	anti-parallel
Strand 4	D	225	231	anti-parallel
Strand 5	D	238	239	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	194	195	first strand
Strand 2	D	186	190	anti-parallel
Strand 3	D	174	179	anti-parallel
Strand 4	D	225	231	anti-parallel
Strand 5	D	243	245	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9WND

Analysis of interatomic Contacts of Structural Units in PDB entry:
9WND