Analysis of interatomic Contacts of Structural Units in PDB entry:
9WOP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9WOP entry

There are 2 chains in PDB entry 9WOP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 MET 1GLU 14
A
 GLY 3ARG 864
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 9WOP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
2 13Right-handed alpha
Helix 2
AA2
A
3 10Right-handed 310
Helix 3
AA3
A
74 88Right-handed alpha
Helix 4
AA4
A
98 106Right-handed alpha
Helix 5
AA5
A
125 140Right-handed alpha
Helix 6
AA6
A
198 200Right-handed 310
Helix 7
AA7
A
201 212Right-handed alpha
Helix 8
AA8
A
270 285Right-handed alpha
Helix 9
AA9
A
316 324Right-handed alpha
Helix 10
AB1
A
332 356Right-handed alpha
Helix 11
AB2
A
364 366Right-handed 310
Helix 12
AB3
A
407 425Right-handed alpha
Helix 13
AB4
A
430 434Right-handed 310
Helix 14
AB5
A
437 450Right-handed alpha
Helix 15
AB6
A
450 471Right-handed alpha
Helix 16
AB7
A
490 505Right-handed alpha
Helix 17
AB8
A
517 522Right-handed alpha
Helix 18
AB9
A
533 544Right-handed alpha
Helix 19
AC1
A
547 558Right-handed alpha
Helix 20
AC2
A
574 584Right-handed alpha
Helix 21
AC3
A
586 596Right-handed alpha
Helix 22
AC4
A
612 626Right-handed alpha
Helix 23
AC5
A
630 648Right-handed alpha
Helix 24
AC6
A
668 682Right-handed alpha
Helix 25
AC7
A
687 701Right-handed alpha
Helix 26
AC8
A
728 743Right-handed alpha
Helix 27
AC9
A
747 756Right-handed alpha
Helix 28
AD1
A
773 776Right-handed 310
Helix 29
AD2
A
777 783Right-handed alpha
Helix 30
AD3
A
788 801Right-handed alpha
Helix 31
AD4
A
815 819Right-handed 310
Helix 32
AD5
A
828 842Right-handed alpha
Helix 33
AD6
A
852 860Right-handed alpha
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There are 5 sheets in PDB entry 9WOP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 43first strand
Strand 2
A
49 54anti-parallel
Strand 3
A
93 96anti-parallel
Strand 4
A
119 121anti-parallel
Strand 5
A
62 68anti-parallel
Strand 6
A
160 166anti-parallel
Strand 7
A
153 154anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 236first strand
Strand 2
A
239 246anti-parallel
Strand 3
A
252 258anti-parallel
Strand 4
A
303 309anti-parallel
Strand 5
A
294 300anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
314 315first strand
Strand 2
A
368 370anti-parallel
Strand 3
A
376 378anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
703 705first strand
Strand 2
A
710 712anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
805 807first strand
Strand 2
A
810 812anti-parallel
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