Analysis of interatomic Contacts of Structural Units in PDB entry:
9WOY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9WOY entry

There are 4 chains in PDB entry 9WOY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 497TYR 750
B
 ILE 500TYR 750
C
 ARG 145SER 160
D
 SER 146SER 157
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 28 helices in PDB entry 9WOY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
503 517Right-handed alpha
Helix 2
AA2
A
518 527Right-handed alpha
Helix 3
AA3
A
552 567Right-handed alpha
Helix 4
AA4
A
582 591Right-handed alpha
Helix 5
AA5
A
598 602Right-handed 310
Helix 6
AA6
A
603 627Right-handed alpha
Helix 7
AA7
A
649 651Right-handed 310
Helix 8
AA8
A
652 663Right-handed alpha
Helix 9
AA9
A
668 685Right-handed alpha
Helix 10
AB1
A
687 691Right-handed 310
Helix 11
AB2
A
712 719Right-handed alpha
Helix 12
AB3
A
719 724Right-handed alpha
Helix 13
AB4
A
732 737Right-handed alpha
Helix 14
AB5
B
503 517Right-handed alpha
Helix 15
AB6
B
518 527Right-handed alpha
Helix 16
AB7
B
552 567Right-handed alpha
Helix 17
AB8
B
582 592Right-handed alpha
Helix 18
AB9
B
593 596Right-handed 310
Helix 19
AC1
B
603 618Right-handed alpha
Helix 20
AC2
B
618 627Right-handed alpha
Helix 21
AC3
B
649 651Right-handed 310
Helix 22
AC4
B
652 663Right-handed alpha
Helix 23
AC5
B
668 685Right-handed alpha
Helix 24
AC6
B
687 691Right-handed 310
Helix 25
AC7
B
712 719Right-handed alpha
Helix 26
AC8
B
719 724Right-handed alpha
Helix 27
AC9
B
731 736Right-handed 310
Helix 28
AD1
C
153 159Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 9WOY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
529 533first strand
Strand 2
A
538 543anti-parallel
Strand 3
A
546 551anti-parallel
Strand 4
A
740 742anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
629 630first strand
Strand 2
A
635 641anti-parallel
Strand 3
A
572 581anti-parallel
Strand 4
C
147 150parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
529 533first strand
Strand 2
B
538 543anti-parallel
Strand 3
B
546 551anti-parallel
Strand 4
B
740 742anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
580 581first strand
Strand 2
B
635 641anti-parallel
Strand 3
B
629 630anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
580 581first strand
Strand 2
B
635 641anti-parallel
Strand 3
B
572 577anti-parallel
Strand 4
D
147 150parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il