Analysis of interatomic Contacts of Structural Units in PDB entry:
9WP4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9WP4 entry

There are 10 chains in PDB entry 9WP4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 4SER 56
A
 THR 58THR 118
A
 TRP 120PRO 123
A
 LEU 125GLY 187
A
 GLY 189LYS 333
B
 ALA 5ALA 74
B
 VAL 76THR 118
B
 TRP 120SER 180
B
 GLY 182GLY 182
B
 PHE 184LYS 333
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 9WP4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 35Right-handed alpha
Helix 2
AA2
A
46 56Right-handed alpha
Helix 3
AA3
A
69 76Right-handed alpha
Helix 4
AA4
A
105 114Right-handed alpha
Helix 5
AA5
A
122 129Right-handed alpha
Helix 6
AA6
A
148 162Right-handed alpha
Helix 7
AA7
A
162 169Right-handed alpha
Helix 8
AA8
A
188 200Right-handed alpha
Helix 9
AA9
A
209 215Right-handed alpha
Helix 10
AB1
A
233 244Right-handed alpha
Helix 11
AB2
A
279 295Right-handed alpha
Helix 12
AB3
A
295 301Right-handed alpha
Helix 13
AB4
A
302 304Right-handed 310
Helix 14
AB5
A
310 322Right-handed alpha
Helix 15
AB6
B
20 35Right-handed alpha
Helix 16
AB7
B
46 56Right-handed alpha
Helix 17
AB8
B
69 76Right-handed alpha
Helix 18
AB9
B
105 114Right-handed alpha
Helix 19
AC1
B
122 129Right-handed alpha
Helix 20
AC2
B
148 162Right-handed alpha
Helix 21
AC3
B
162 169Right-handed alpha
Helix 22
AC4
B
188 200Right-handed alpha
Helix 23
AC5
B
209 214Right-handed alpha
Helix 24
AC6
B
233 243Right-handed alpha
Helix 25
AC7
B
279 295Right-handed alpha
Helix 26
AC8
B
295 301Right-handed alpha
Helix 27
AC9
B
302 304Right-handed 310
Helix 28
AD1
B
310 322Right-handed alpha
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There are 6 sheets in PDB entry 9WP4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 44first strand
Strand 2
A
10 16parallel
Strand 3
A
61 64parallel
Strand 4
A
266 273anti-parallel
Strand 5
A
81 95anti-parallel
Strand 6
A
203 208anti-parallel
Strand 7
A
140 144parallel
Strand 8
A
183 187parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 44first strand
Strand 2
A
10 16parallel
Strand 3
A
61 64parallel
Strand 4
A
266 273anti-parallel
Strand 5
A
81 95anti-parallel
Strand 6
A
218 219anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 104first strand
Strand 2
A
221 223parallel
Strand 3
A
229 230anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 44first strand
Strand 2
B
10 16parallel
Strand 3
B
61 64parallel
Strand 4
B
266 273anti-parallel
Strand 5
B
81 95anti-parallel
Strand 6
B
203 208anti-parallel
Strand 7
B
140 144parallel
Strand 8
B
183 187parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 44first strand
Strand 2
B
10 16parallel
Strand 3
B
61 64parallel
Strand 4
B
266 273anti-parallel
Strand 5
B
81 95anti-parallel
Strand 6
B
218 219anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
103 104first strand
Strand 2
B
221 223parallel
Strand 3
B
229 230anti-parallel
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