Analysis of interatomic Contacts of Structural Units in PDB entry:
9WP6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9WP6 entry

There are 10 chains in PDB entry 9WP6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 33	LYS 422
B	GLY 33	LYS 422
C	GLY 33	LYS 422
D	GLY 33	LYS 422
E	GLY 33	LYS 422
F	GLY 33	LYS 422
G	GLY 33	LYS 422
H	GLY 33	LYS 422
I	GLY 33	LYS 422
J	GLY 33	LYS 422

There are125 helices in PDB entry 9WP6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	54	60	Right-handed alpha
Helix 2	AA2	A	97	101	Right-handed 310
Helix 3	AA3	A	157	166	Right-handed alpha
Helix 4	AA4	A	167	174	Right-handed alpha
Helix 5	AA5	A	219	234	Right-handed alpha
Helix 6	AA6	A	258	280	Right-handed alpha
Helix 7	AA7	A	305	310	Right-handed alpha
Helix 8	AA8	A	312	327	Right-handed alpha
Helix 9	AA9	A	327	336	Right-handed alpha
Helix 10	AB1	A	369	376	Right-handed alpha
Helix 11	AB2	A	390	403	Right-handed alpha
Helix 12	AB3	A	409	421	Right-handed alpha
Helix 13	AB4	B	54	60	Right-handed alpha
Helix 14	AB5	B	97	101	Right-handed 310
Helix 15	AB6	B	157	166	Right-handed alpha
Helix 16	AB7	B	167	174	Right-handed alpha
Helix 17	AB8	B	219	234	Right-handed alpha
Helix 18	AB9	B	258	279	Right-handed alpha
Helix 19	AC1	B	305	310	Right-handed alpha
Helix 20	AC2	B	312	327	Right-handed alpha
Helix 21	AC3	B	327	335	Right-handed alpha
Helix 22	AC4	B	338	343	Right-handed alpha
Helix 23	AC5	B	369	376	Right-handed alpha
Helix 24	AC6	B	390	403	Right-handed alpha
Helix 25	AC7	B	410	420	Right-handed alpha
Helix 26	AC8	C	54	60	Right-handed alpha
Helix 27	AC9	C	157	166	Right-handed alpha
Helix 28	AD1	C	167	174	Right-handed alpha
Helix 29	AD2	C	219	234	Right-handed alpha
Helix 30	AD3	C	258	280	Right-handed alpha
Helix 31	AD4	C	305	310	Right-handed alpha
Helix 32	AD5	C	312	326	Right-handed alpha
Helix 33	AD6	C	327	336	Right-handed alpha
Helix 34	AD7	C	338	343	Right-handed alpha
Helix 35	AD8	C	369	376	Right-handed alpha
Helix 36	AD9	C	390	403	Right-handed alpha
Helix 37	AE1	C	409	420	Right-handed alpha
Helix 38	AE2	D	54	60	Right-handed alpha
Helix 39	AE3	D	157	166	Right-handed alpha
Helix 40	AE4	D	167	174	Right-handed alpha
Helix 41	AE5	D	219	234	Right-handed alpha
Helix 42	AE6	D	258	280	Right-handed alpha
Helix 43	AE7	D	305	310	Right-handed alpha
Helix 44	AE8	D	312	327	Right-handed alpha
Helix 45	AE9	D	327	336	Right-handed alpha
Helix 46	AF1	D	338	342	Right-handed 310
Helix 47	AF2	D	369	376	Right-handed alpha
Helix 48	AF3	D	390	403	Right-handed alpha
Helix 49	AF4	D	412	422	Right-handed alpha
Helix 50	AF5	E	54	60	Right-handed alpha
Helix 51	AF6	E	97	101	Right-handed 310
Helix 52	AF7	E	157	166	Right-handed alpha
Helix 53	AF8	E	167	174	Right-handed alpha
Helix 54	AF9	E	219	234	Right-handed alpha
Helix 55	AG1	E	258	280	Right-handed alpha
Helix 56	AG2	E	305	310	Right-handed alpha
Helix 57	AG3	E	312	327	Right-handed alpha
Helix 58	AG4	E	327	336	Right-handed alpha
Helix 59	AG5	E	338	343	Right-handed alpha
Helix 60	AG6	E	369	376	Right-handed alpha
Helix 61	AG7	E	390	403	Right-handed alpha
Helix 62	AG8	E	409	421	Right-handed alpha
Helix 63	AG9	F	54	60	Right-handed alpha
Helix 64	AH1	F	97	101	Right-handed 310
Helix 65	AH2	F	157	166	Right-handed alpha
Helix 66	AH3	F	167	174	Right-handed alpha
Helix 67	AH4	F	219	234	Right-handed alpha
Helix 68	AH5	F	258	279	Right-handed alpha
Helix 69	AH6	F	305	310	Right-handed alpha
Helix 70	AH7	F	312	327	Right-handed alpha
Helix 71	AH8	F	327	336	Right-handed alpha
Helix 72	AH9	F	338	343	Right-handed alpha
Helix 73	AI1	F	369	376	Right-handed alpha
Helix 74	AI2	F	390	403	Right-handed alpha
Helix 75	AI3	F	412	418	Right-handed alpha
Helix 76	AI4	G	54	60	Right-handed alpha
Helix 77	AI5	G	97	101	Right-handed 310
Helix 78	AI6	G	157	167	Right-handed alpha
Helix 79	AI7	G	167	174	Right-handed alpha
Helix 80	AI8	G	219	234	Right-handed alpha
Helix 81	AI9	G	258	280	Right-handed alpha
Helix 82	AJ1	G	305	310	Right-handed alpha
Helix 83	AJ2	G	312	327	Right-handed alpha
Helix 84	AJ3	G	327	335	Right-handed alpha
Helix 85	AJ4	G	338	343	Right-handed alpha
Helix 86	AJ5	G	369	376	Right-handed alpha
Helix 87	AJ6	G	390	403	Right-handed alpha
Helix 88	AJ7	G	412	420	Right-handed alpha
Helix 89	AJ8	H	54	60	Right-handed alpha
Helix 90	AJ9	H	97	101	Right-handed 310
Helix 91	AK1	H	157	166	Right-handed alpha
Helix 92	AK2	H	167	174	Right-handed alpha
Helix 93	AK3	H	219	234	Right-handed alpha
Helix 94	AK4	H	258	280	Right-handed alpha
Helix 95	AK5	H	305	310	Right-handed alpha
Helix 96	AK6	H	312	327	Right-handed alpha
Helix 97	AK7	H	327	336	Right-handed alpha
Helix 98	AK8	H	336	342	Right-handed alpha
Helix 99	AK9	H	369	376	Right-handed alpha
Helix 100	AL1	H	390	403	Right-handed alpha
Helix 101	AL2	H	411	420	Right-handed alpha
Helix 102	AL3	I	54	60	Right-handed alpha
Helix 103	AL4	I	97	101	Right-handed 310
Helix 104	AL5	I	157	166	Right-handed alpha
Helix 105	AL6	I	167	174	Right-handed alpha
Helix 106	AL7	I	219	234	Right-handed alpha
Helix 107	AL8	I	258	280	Right-handed alpha
Helix 108	AL9	I	305	310	Right-handed alpha
Helix 109	AM1	I	312	327	Right-handed alpha
Helix 110	AM2	I	327	336	Right-handed alpha
Helix 111	AM3	I	369	376	Right-handed alpha
Helix 112	AM4	I	390	403	Right-handed alpha
Helix 113	AM5	I	412	421	Right-handed alpha
Helix 114	AM6	J	54	60	Right-handed alpha
Helix 115	AM7	J	97	101	Right-handed 310
Helix 116	AM8	J	157	167	Right-handed alpha
Helix 117	AM9	J	167	174	Right-handed alpha
Helix 118	AN1	J	219	234	Right-handed alpha
Helix 119	AN2	J	258	279	Right-handed alpha
Helix 120	AN3	J	305	310	Right-handed alpha
Helix 121	AN4	J	312	326	Right-handed alpha
Helix 122	AN5	J	327	336	Right-handed alpha
Helix 123	AN6	J	369	376	Right-handed alpha
Helix 124	AN7	J	390	403	Right-handed alpha
Helix 125	AN8	J	411	421	Right-handed alpha

There are 25 sheets in PDB entry 9WP6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	43	first strand
Strand 2	G	39	44	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	107	first strand
Strand 2	A	120	130	anti-parallel
Strand 3	A	139	146	anti-parallel
Strand 4	A	70	77	parallel
Strand 5	A	84	91	anti-parallel
Strand 6	B	237	242	anti-parallel
Strand 7	B	248	257	anti-parallel
Strand 8	B	176	186	anti-parallel
Strand 9	B	282	284	anti-parallel

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There are 12 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	107	first strand
Strand 2	A	120	130	anti-parallel
Strand 3	A	139	146	anti-parallel
Strand 4	A	70	77	parallel
Strand 5	A	84	91	anti-parallel
Strand 6	B	237	242	anti-parallel
Strand 7	B	248	257	anti-parallel
Strand 8	B	176	186	anti-parallel
Strand 9	B	301	304	anti-parallel
Strand 10	B	380	382	anti-parallel
Strand 11	B	366	368	anti-parallel
Strand 12	B	357	359	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	282	284	first strand
Strand 2	A	176	186	anti-parallel
Strand 3	A	301	304	anti-parallel
Strand 4	A	380	382	anti-parallel
Strand 5	A	366	368	anti-parallel
Strand 6	A	357	359	parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	282	284	first strand
Strand 2	A	176	186	anti-parallel
Strand 3	A	248	257	anti-parallel
Strand 4	A	237	242	anti-parallel
Strand 5	E	84	91	anti-parallel
Strand 6	E	70	77	anti-parallel
Strand 7	E	139	146	parallel
Strand 8	E	120	130	anti-parallel
Strand 9	E	104	107	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	41	first strand
Strand 2	F	41	44	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	104	107	first strand
Strand 2	B	120	130	anti-parallel
Strand 3	B	139	146	anti-parallel
Strand 4	B	70	77	parallel
Strand 5	B	84	91	anti-parallel
Strand 6	C	237	242	anti-parallel
Strand 7	C	248	257	anti-parallel
Strand 8	C	176	186	anti-parallel
Strand 9	C	282	284	anti-parallel

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There are 12 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	104	107	first strand
Strand 2	B	120	130	anti-parallel
Strand 3	B	139	146	anti-parallel
Strand 4	B	70	77	parallel
Strand 5	B	84	91	anti-parallel
Strand 6	C	237	242	anti-parallel
Strand 7	C	248	257	anti-parallel
Strand 8	C	176	186	anti-parallel
Strand 9	C	300	304	anti-parallel
Strand 10	C	380	382	anti-parallel
Strand 11	C	366	368	anti-parallel
Strand 12	C	357	359	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	38	42	first strand
Strand 2	J	40	44	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	104	107	first strand
Strand 2	C	120	130	anti-parallel
Strand 3	C	139	146	anti-parallel
Strand 4	C	70	77	parallel
Strand 5	C	84	91	anti-parallel
Strand 6	D	237	242	anti-parallel
Strand 7	D	248	257	anti-parallel
Strand 8	D	176	186	anti-parallel
Strand 9	D	282	284	anti-parallel

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There are 12 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	104	107	first strand
Strand 2	C	120	130	anti-parallel
Strand 3	C	139	146	anti-parallel
Strand 4	C	70	77	parallel
Strand 5	C	84	91	anti-parallel
Strand 6	D	237	242	anti-parallel
Strand 7	D	248	257	anti-parallel
Strand 8	D	176	186	anti-parallel
Strand 9	D	301	304	anti-parallel
Strand 10	D	380	382	anti-parallel
Strand 11	D	366	368	anti-parallel
Strand 12	D	357	359	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	41	43	first strand
Strand 2	I	39	41	anti-parallel

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There are 9 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	104	107	first strand
Strand 2	D	120	130	anti-parallel
Strand 3	D	139	146	anti-parallel
Strand 4	D	70	77	parallel
Strand 5	D	84	91	anti-parallel
Strand 6	E	237	242	anti-parallel
Strand 7	E	248	257	anti-parallel
Strand 8	E	176	186	anti-parallel
Strand 9	E	282	284	anti-parallel

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There are 12 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	104	107	first strand
Strand 2	D	120	130	anti-parallel
Strand 3	D	139	146	anti-parallel
Strand 4	D	70	77	parallel
Strand 5	D	84	91	anti-parallel
Strand 6	E	237	242	anti-parallel
Strand 7	E	248	257	anti-parallel
Strand 8	E	176	186	anti-parallel
Strand 9	E	301	304	anti-parallel
Strand 10	E	380	382	anti-parallel
Strand 11	E	366	368	anti-parallel
Strand 12	E	357	359	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	39	42	first strand
Strand 2	H	40	43	anti-parallel

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There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	104	107	first strand
Strand 2	F	120	130	anti-parallel
Strand 3	F	139	146	anti-parallel
Strand 4	F	70	77	parallel
Strand 5	F	84	91	anti-parallel
Strand 6	G	237	242	anti-parallel
Strand 7	G	248	257	anti-parallel
Strand 8	G	176	186	anti-parallel
Strand 9	G	282	284	anti-parallel

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There are 12 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	104	107	first strand
Strand 2	F	120	130	anti-parallel
Strand 3	F	139	146	anti-parallel
Strand 4	F	70	77	parallel
Strand 5	F	84	91	anti-parallel
Strand 6	G	237	242	anti-parallel
Strand 7	G	248	257	anti-parallel
Strand 8	G	176	186	anti-parallel
Strand 9	G	300	304	anti-parallel
Strand 10	G	380	382	anti-parallel
Strand 11	G	366	368	anti-parallel
Strand 12	G	357	359	parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	282	284	first strand
Strand 2	F	176	186	anti-parallel
Strand 3	F	300	304	anti-parallel
Strand 4	F	380	382	anti-parallel
Strand 5	F	366	368	anti-parallel
Strand 6	F	357	359	parallel

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There are 9 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	282	284	first strand
Strand 2	F	176	186	anti-parallel
Strand 3	F	248	257	anti-parallel
Strand 4	F	237	242	anti-parallel
Strand 5	J	84	91	anti-parallel
Strand 6	J	70	77	anti-parallel
Strand 7	J	139	146	parallel
Strand 8	J	120	130	anti-parallel
Strand 9	J	104	107	anti-parallel

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There are 9 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	104	107	first strand
Strand 2	G	120	130	anti-parallel
Strand 3	G	139	146	anti-parallel
Strand 4	G	70	77	parallel
Strand 5	G	84	91	anti-parallel
Strand 6	H	237	242	anti-parallel
Strand 7	H	248	257	anti-parallel
Strand 8	H	176	186	anti-parallel
Strand 9	H	282	284	anti-parallel

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There are 12 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	104	107	first strand
Strand 2	G	120	130	anti-parallel
Strand 3	G	139	146	anti-parallel
Strand 4	G	70	77	parallel
Strand 5	G	84	91	anti-parallel
Strand 6	H	237	242	anti-parallel
Strand 7	H	248	257	anti-parallel
Strand 8	H	176	186	anti-parallel
Strand 9	H	301	304	anti-parallel
Strand 10	H	380	382	anti-parallel
Strand 11	H	366	368	anti-parallel
Strand 12	H	357	359	parallel

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There are 9 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	104	107	first strand
Strand 2	H	120	130	anti-parallel
Strand 3	H	139	146	anti-parallel
Strand 4	H	70	77	parallel
Strand 5	H	84	91	anti-parallel
Strand 6	I	237	242	anti-parallel
Strand 7	I	248	257	anti-parallel
Strand 8	I	176	186	anti-parallel
Strand 9	I	282	284	anti-parallel

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There are 12 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	104	107	first strand
Strand 2	H	120	130	anti-parallel
Strand 3	H	139	146	anti-parallel
Strand 4	H	70	77	parallel
Strand 5	H	84	91	anti-parallel
Strand 6	I	237	242	anti-parallel
Strand 7	I	248	257	anti-parallel
Strand 8	I	176	186	anti-parallel
Strand 9	I	300	304	anti-parallel
Strand 10	I	380	382	anti-parallel
Strand 11	I	366	368	anti-parallel
Strand 12	I	357	359	parallel

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There are 9 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	104	107	first strand
Strand 2	I	120	130	anti-parallel
Strand 3	I	139	146	anti-parallel
Strand 4	I	70	77	parallel
Strand 5	I	84	91	anti-parallel
Strand 6	J	237	242	anti-parallel
Strand 7	J	248	257	anti-parallel
Strand 8	J	176	186	anti-parallel
Strand 9	J	282	284	anti-parallel

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There are 12 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	104	107	first strand
Strand 2	I	120	130	anti-parallel
Strand 3	I	139	146	anti-parallel
Strand 4	I	70	77	parallel
Strand 5	I	84	91	anti-parallel
Strand 6	J	237	242	anti-parallel
Strand 7	J	248	257	anti-parallel
Strand 8	J	176	186	anti-parallel
Strand 9	J	301	304	anti-parallel
Strand 10	J	380	382	anti-parallel
Strand 11	J	366	368	anti-parallel
Strand 12	J	357	359	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9WP6

Analysis of interatomic Contacts of Structural Units in PDB entry:
9WP6