Analysis of interatomic Contacts of Structural Units in PDB entry:
9WP7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9WP7 entry

There are 16 chains in PDB entry 9WP7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 7ASN 67
A
 GLN 69PRO 97
A
 ASN 99LEU 110
A
 ARG 112LEU 168
A
 SER 170LEU 202
A
 ALA 204THR 240
A
 ALA 242LYS 307
A
 GLN 309SER 311
B
 SER 7LEU 110
B
 ARG 112LEU 168
B
 SER 170LEU 202
B
 ALA 204THR 240
B
 ALA 242THR 264
B
 VAL 266GLY 279
B
 ILE 281LYS 307
B
 GLN 309GLU 313
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 29 helices in PDB entry 9WP7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 30Right-handed alpha
Helix 2
AA2
A
43 54Right-handed alpha
Helix 3
AA3
A
67 77Right-handed alpha
Helix 4
AA4
A
107 115Right-handed alpha
Helix 5
AA5
A
116 119Right-handed 310
Helix 6
AA6
A
124 128Right-handed 310
Helix 7
AA7
A
146 157Right-handed alpha
Helix 8
AA8
A
172 183Right-handed alpha
Helix 9
AA9
A
191 197Right-handed alpha
Helix 10
AB1
A
217 223Right-handed alpha
Helix 11
AB2
A
239 245Right-handed alpha
Helix 12
AB3
A
245 267Right-handed alpha
Helix 13
AB4
A
272 285Right-handed alpha
Helix 14
AB5
A
301 311Right-handed alpha
Helix 15
AB6
B
18 30Right-handed alpha
Helix 16
AB7
B
31 35Right-handed 310
Helix 17
AB8
B
43 54Right-handed alpha
Helix 18
AB9
B
67 78Right-handed alpha
Helix 19
AC1
B
107 115Right-handed alpha
Helix 20
AC2
B
116 119Right-handed 310
Helix 21
AC3
B
124 128Right-handed 310
Helix 22
AC4
B
146 157Right-handed alpha
Helix 23
AC5
B
172 183Right-handed alpha
Helix 24
AC6
B
191 197Right-handed alpha
Helix 25
AC7
B
217 223Right-handed alpha
Helix 26
AC8
B
239 245Right-handed alpha
Helix 27
AC9
B
245 267Right-handed alpha
Helix 28
AD1
B
272 285Right-handed alpha
Helix 29
AD2
B
301 311Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 9WP7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 40first strand
Strand 2
A
10 14parallel
Strand 3
A
59 62parallel
Strand 4
A
230 238anti-parallel
Strand 5
A
81 90anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 170first strand
Strand 2
A
138 142parallel
Strand 3
A
186 190parallel
Strand 4
A
92 95anti-parallel
Strand 5
A
203 204anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 106first strand
Strand 2
A
206 208parallel
Strand 3
A
213 214anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 40first strand
Strand 2
B
10 14parallel
Strand 3
B
59 62parallel
Strand 4
B
230 238anti-parallel
Strand 5
B
81 90anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
168 170first strand
Strand 2
B
138 142parallel
Strand 3
B
186 190parallel
Strand 4
B
92 95anti-parallel
Strand 5
B
203 204anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
104 106first strand
Strand 2
B
206 208parallel
Strand 3
B
213 214anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il