Analysis of interatomic Contacts of Structural Units in PDB entry:
9WPF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9WPF entry

There are 4 chains in PDB entry 9WPF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1SER 392
B
 LYS 1LYS 460
C
 GLY 1LEU 456
D
 GLY 1LYS 457
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 9WPF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 13Right-handed alpha
Helix 2
AA2
A
14 19Right-handed alpha
Helix 3
AA3
A
27 32Right-handed alpha
Helix 4
AA4
A
32 56Right-handed alpha
Helix 5
AA5
A
59 86Right-handed alpha
Helix 6
AA6
A
86 95Right-handed alpha
Helix 7
AA7
A
96 98Right-handed 310
Helix 8
AA8
A
102 108Right-handed alpha
Helix 9
AA9
A
109 140Right-handed alpha
Helix 10
AB1
A
141 144Right-handed 310
Helix 11
AB2
A
146 150Right-handed 310
Helix 12
AB3
A
151 201Right-handed alpha
Helix 13
AB4
A
235 289Right-handed alpha
Helix 14
AB5
A
295 335Right-handed alpha
Helix 15
AB6
A
342 359Right-handed alpha
Helix 16
AB7
A
372 390Right-handed alpha
Helix 17
AB8
B
4 9Right-handed alpha
Helix 18
AB9
B
9 18Right-handed alpha
Helix 19
AC1
B
31 63Right-handed alpha
Helix 20
AC2
B
66 93Right-handed alpha
Helix 21
AC3
B
93 103Right-handed alpha
Helix 22
AC4
B
110 112Right-handed 310
Helix 23
AC5
B
113 152Right-handed alpha
Helix 24
AC6
B
189 242Right-handed alpha
Helix 25
AC7
B
302 333Right-handed alpha
Helix 26
AC8
B
334 357Right-handed alpha
Helix 27
AC9
B
362 394Right-handed alpha
Helix 28
AD1
B
396 400Right-handed 310
Helix 29
AD2
B
410 423Right-handed alpha
Helix 30
AD3
B
432 434Right-handed 310
Helix 31
AD4
B
438 458Right-handed alpha
Helix 32
AD5
C
2 6Right-handed alpha
Helix 33
AD6
C
6 17Right-handed alpha
Helix 34
AD7
C
28 60Right-handed alpha
Helix 35
AD8
C
63 89Right-handed alpha
Helix 36
AD9
C
90 100Right-handed alpha
Helix 37
AE1
C
110 149Right-handed alpha
Helix 38
AE2
C
186 238Right-handed alpha
Helix 39
AE3
C
299 330Right-handed alpha
Helix 40
AE4
C
330 354Right-handed alpha
Helix 41
AE5
C
359 392Right-handed alpha
Helix 42
AE6
C
406 420Right-handed alpha
Helix 43
AE7
C
435 454Right-handed alpha
Helix 44
AE8
D
2 6Right-handed alpha
Helix 45
AE9
D
6 17Right-handed alpha
Helix 46
AF1
D
28 61Right-handed alpha
Helix 47
AF2
D
63 89Right-handed alpha
Helix 48
AF3
D
90 98Right-handed alpha
Helix 49
AF4
D
107 109Right-handed 310
Helix 50
AF5
D
110 149Right-handed alpha
Helix 51
AF6
D
186 239Right-handed alpha
Helix 52
AF7
D
299 354Right-handed alpha
Helix 53
AF8
D
359 391Right-handed alpha
Helix 54
AF9
D
391 399Right-handed alpha
Helix 55
AG1
D
406 414Right-handed alpha
Helix 56
AG2
D
415 420Right-handed alpha
Helix 57
AG3
D
435 452Right-handed alpha
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There are 5 sheets in PDB entry 9WPF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
159 160first strand
Strand 2
B
168 169anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
430 431first strand
Strand 2
B
435 436anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
153 157first strand
Strand 2
C
165 169anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
427 428first strand
Strand 2
C
432 433anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
153 157first strand
Strand 2
D
165 169anti-parallel
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