Analysis of interatomic Contacts of Structural Units in PDB entry:
9WPK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9WPK entry

There are 3 chains in PDB entry 9WPK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LEU 460
B	MET 1	LEU 460
C	MET 1	SER 406

There are 51 helices in PDB entry 9WPK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	45	47	Right-handed 310
Helix 2	AA2	A	62	75	Right-handed alpha
Helix 3	AA3	A	85	87	Right-handed 310
Helix 4	AA4	A	88	89	Right-handed 310
Helix 5	AA5	A	90	104	Right-handed alpha
Helix 6	AA6	A	112	119	Right-handed alpha
Helix 7	AA7	A	129	156	Right-handed alpha
Helix 8	AA8	A	162	177	Right-handed alpha
Helix 9	AA9	A	186	193	Right-handed alpha
Helix 10	AB1	A	195	203	Right-handed alpha
Helix 11	AB2	A	255	270	Right-handed alpha
Helix 12	AB3	A	315	332	Right-handed alpha
Helix 13	AB4	A	344	351	Right-handed alpha
Helix 14	AB5	A	361	376	Right-handed alpha
Helix 15	AB6	A	385	390	Right-handed 310
Helix 16	AB7	A	409	420	Right-handed alpha
Helix 17	AB8	A	446	456	Right-handed alpha
Helix 18	AB9	B	45	47	Right-handed 310
Helix 19	AC1	B	62	76	Right-handed alpha
Helix 20	AC2	B	85	87	Right-handed 310
Helix 21	AC3	B	88	90	Right-handed 310
Helix 22	AC4	B	91	104	Right-handed alpha
Helix 23	AC5	B	112	119	Right-handed alpha
Helix 24	AC6	B	129	156	Right-handed alpha
Helix 25	AC7	B	162	176	Right-handed alpha
Helix 26	AC8	B	186	193	Right-handed alpha
Helix 27	AC9	B	195	203	Right-handed alpha
Helix 28	AD1	B	255	269	Right-handed alpha
Helix 29	AD2	B	270	272	Right-handed 310
Helix 30	AD3	B	315	330	Right-handed alpha
Helix 31	AD4	B	344	351	Right-handed alpha
Helix 32	AD5	B	361	376	Right-handed alpha
Helix 33	AD6	B	385	390	Right-handed 310
Helix 34	AD7	B	409	420	Right-handed alpha
Helix 35	AD8	B	446	456	Right-handed alpha
Helix 36	AD9	C	62	75	Right-handed alpha
Helix 37	AE1	C	85	87	Right-handed 310
Helix 38	AE2	C	88	90	Right-handed 310
Helix 39	AE3	C	91	104	Right-handed alpha
Helix 40	AE4	C	112	118	Right-handed alpha
Helix 41	AE5	C	129	156	Right-handed alpha
Helix 42	AE6	C	162	176	Right-handed alpha
Helix 43	AE7	C	186	193	Right-handed alpha
Helix 44	AE8	C	195	203	Right-handed alpha
Helix 45	AE9	C	255	270	Right-handed alpha
Helix 46	AF1	C	315	330	Right-handed alpha
Helix 47	AF2	C	344	351	Right-handed alpha
Helix 48	AF3	C	361	376	Right-handed alpha
Helix 49	AF4	C	385	390	Right-handed 310
Helix 50	AF5	C	409	420	Right-handed alpha
Helix 51	AF6	C	446	456	Right-handed alpha

There are 15 sheets in PDB entry 9WPK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	12	first strand
Strand 2	A	123	126	parallel
Strand 3	A	80	83	parallel
Strand 4	A	20	25	parallel
Strand 5	A	49	53	parallel
Strand 6	A	41	44	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	181	185	first strand
Strand 2	A	210	217	anti-parallel
Strand 3	A	276	284	anti-parallel
Strand 4	A	232	233	parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	181	185	first strand
Strand 2	A	210	217	anti-parallel
Strand 3	A	276	284	anti-parallel
Strand 4	A	226	230	parallel
Strand 5	A	335	340	parallel
Strand 6	A	427	431	parallel
Strand 7	A	355	359	anti-parallel
Strand 8	A	379	381	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	298	300	first strand
Strand 2	A	306	308	anti-parallel
Strand 3	A	400	401	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	437	438	first strand
Strand 2	A	441	442	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	12	first strand
Strand 2	B	123	126	parallel
Strand 3	B	80	83	parallel
Strand 4	B	20	25	parallel
Strand 5	B	49	53	parallel
Strand 6	B	41	44	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	181	185	first strand
Strand 2	B	210	217	anti-parallel
Strand 3	B	276	284	anti-parallel
Strand 4	B	232	233	parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	181	185	first strand
Strand 2	B	210	217	anti-parallel
Strand 3	B	276	284	anti-parallel
Strand 4	B	226	230	parallel
Strand 5	B	335	340	parallel
Strand 6	B	427	431	parallel
Strand 7	B	355	359	anti-parallel
Strand 8	B	379	381	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	298	300	first strand
Strand 2	B	306	308	anti-parallel
Strand 3	B	400	401	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	437	438	first strand
Strand 2	B	441	442	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	12	first strand
Strand 2	C	123	126	parallel
Strand 3	C	80	83	parallel
Strand 4	C	20	26	parallel
Strand 5	C	49	55	parallel
Strand 6	C	41	44	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	181	185	first strand
Strand 2	C	210	217	anti-parallel
Strand 3	C	276	284	anti-parallel
Strand 4	C	232	233	parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	181	185	first strand
Strand 2	C	210	217	anti-parallel
Strand 3	C	276	284	anti-parallel
Strand 4	C	226	230	parallel
Strand 5	C	335	340	parallel
Strand 6	C	427	431	parallel
Strand 7	C	355	359	anti-parallel
Strand 8	C	379	381	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	298	300	first strand
Strand 2	C	306	308	anti-parallel
Strand 3	C	400	401	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	437	438	first strand
Strand 2	C	441	442	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9WPK

Analysis of interatomic Contacts of Structural Units in PDB entry:
9WPK