Analysis of interatomic Contacts of Structural Units in PDB entry:
9WPQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9WPQ entry

There are 5 chains in PDB entry 9WPQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 80	CYS 397
C	GLU 3	ASN 340
B	THR 4	VAL 246
D	ALA 7	GLU 63
E	ASP 1	ALA 237

There are 32 helices in PDB entry 9WPQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	81	101	Right-handed alpha
Helix 2	AA2	A	102	105	Right-handed 310
Helix 3	AA3	A	111	127	Right-handed alpha
Helix 4	AA4	A	127	137	Right-handed alpha
Helix 5	AA5	A	147	179	Right-handed alpha
Helix 6	AA6	A	179	185	Right-handed alpha
Helix 7	AA7	A	187	207	Right-handed alpha
Helix 8	AA8	A	208	215	Right-handed alpha
Helix 9	AA9	A	217	221	Right-handed 310
Helix 10	AB1	A	231	243	Right-handed alpha
Helix 11	AB2	A	243	262	Right-handed alpha
Helix 12	AB3	A	316	348	Right-handed alpha
Helix 13	AB4	A	356	382	Right-handed alpha
Helix 14	AB5	A	384	395	Right-handed alpha
Helix 15	AB6	C	4	26	Right-handed alpha
Helix 16	AB7	C	29	34	Right-handed alpha
Helix 17	AB8	C	35	37	Right-handed 310
Helix 18	AB9	B	6	31	Right-handed alpha
Helix 19	AC1	B	45	49	Right-handed 310
Helix 20	AC2	B	95	99	Right-handed 310
Helix 21	AC3	B	117	130	Right-handed alpha
Helix 22	AC4	B	145	156	Right-handed alpha
Helix 23	AC5	B	159	164	Right-handed alpha
Helix 24	AC6	B	165	169	Right-handed 310
Helix 25	AC7	B	183	203	Right-handed alpha
Helix 26	AC8	B	222	243	Right-handed alpha
Helix 27	AC9	D	8	23	Right-handed alpha
Helix 28	AD1	D	29	44	Right-handed alpha
Helix 29	AD2	D	45	48	Right-handed 310
Helix 30	AD3	D	55	59	Right-handed 310
Helix 31	AD4	E	28	32	Right-handed 310
Helix 32	AD5	E	53	56	Right-handed 310

There are 14 sheets in PDB entry 9WPQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	46	52	first strand
Strand 2	C	335	340	anti-parallel
Strand 3	C	327	331	anti-parallel
Strand 4	C	315	320	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	63	first strand
Strand 2	C	69	74	anti-parallel
Strand 3	C	78	83	anti-parallel
Strand 4	C	89	94	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	105	first strand
Strand 2	C	111	116	anti-parallel
Strand 3	C	120	125	anti-parallel
Strand 4	C	134	140	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	146	151	first strand
Strand 2	C	156	161	anti-parallel
Strand 3	C	165	170	anti-parallel
Strand 4	C	175	181	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	187	192	first strand
Strand 2	C	198	203	anti-parallel
Strand 3	C	207	212	anti-parallel
Strand 4	C	218	223	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	229	234	first strand
Strand 2	C	240	245	anti-parallel
Strand 3	C	250	254	anti-parallel
Strand 4	C	262	264	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	273	278	first strand
Strand 2	C	285	289	anti-parallel
Strand 3	C	294	296	anti-parallel
Strand 4	C	306	308	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	69	76	first strand
Strand 2	B	79	86	anti-parallel
Strand 3	B	33	38	parallel
Strand 4	B	105	107	parallel
Strand 5	B	138	139	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	109	111	first strand
Strand 2	B	142	144	parallel
Strand 3	B	214	215	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	7	first strand
Strand 2	E	18	25	anti-parallel
Strand 3	E	78	83	anti-parallel
Strand 4	E	68	73	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	115	119	parallel
Strand 3	E	92	99	anti-parallel
Strand 4	E	33	39	anti-parallel
Strand 5	E	45	51	anti-parallel
Strand 6	E	58	60	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	134	137	first strand
Strand 2	E	231	235	parallel
Strand 3	E	213	219	anti-parallel
Strand 4	E	162	167	anti-parallel
Strand 5	E	174	178	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	134	137	first strand
Strand 2	E	231	235	parallel
Strand 3	E	213	219	anti-parallel
Strand 4	E	226	227	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	143	148	first strand
Strand 2	E	199	204	anti-parallel
Strand 3	E	191	194	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9WPQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9WPQ