Analysis of interatomic Contacts of Structural Units in PDB entry:
9WQ3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9WQ3 entry

There are 6 chains in PDB entry 9WQ3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 33	PRO 369
B	THR 31	PRO 369
D	THR 31	PRO 369
E	THR 31	PRO 369
F	THR 31	PRO 369
G	PHE 32	PRO 369

There are 73 helices in PDB entry 9WQ3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	33	50	Right-handed alpha
Helix 2	AA2	A	51	69	Right-handed alpha
Helix 3	AA3	A	70	76	Right-handed 310
Helix 4	AA4	A	83	106	Right-handed alpha
Helix 5	AA5	A	124	129	Right-handed alpha
Helix 6	AA6	A	142	153	Right-handed alpha
Helix 7	AA7	A	154	157	Right-handed 310
Helix 8	AA8	A	158	177	Right-handed alpha
Helix 9	AA9	A	189	199	Right-handed alpha
Helix 10	AB1	A	237	243	Right-handed alpha
Helix 11	AB2	A	261	265	Right-handed 310
Helix 12	AB3	A	288	309	Right-handed alpha
Helix 13	AB4	A	323	332	Right-handed alpha
Helix 14	AB5	B	33	50	Right-handed alpha
Helix 15	AB6	B	51	69	Right-handed alpha
Helix 16	AB7	B	83	104	Right-handed alpha
Helix 17	AB8	B	142	153	Right-handed alpha
Helix 18	AB9	B	158	177	Right-handed alpha
Helix 19	AC1	B	189	200	Right-handed alpha
Helix 20	AC2	B	238	243	Right-handed 310
Helix 21	AC3	B	287	309	Right-handed alpha
Helix 22	AC4	B	323	332	Right-handed alpha
Helix 23	AC5	D	33	49	Right-handed alpha
Helix 24	AC6	D	51	69	Right-handed alpha
Helix 25	AC7	D	70	76	Right-handed 310
Helix 26	AC8	D	83	104	Right-handed alpha
Helix 27	AC9	D	142	153	Right-handed alpha
Helix 28	AD1	D	154	177	Right-handed alpha
Helix 29	AD2	D	189	200	Right-handed alpha
Helix 30	AD3	D	236	241	Right-handed alpha
Helix 31	AD4	D	259	263	Right-handed 310
Helix 32	AD5	D	287	309	Right-handed alpha
Helix 33	AD6	D	323	333	Right-handed alpha
Helix 34	AD7	D	358	362	Right-handed 310
Helix 35	AD8	E	33	49	Right-handed alpha
Helix 36	AD9	E	51	69	Right-handed alpha
Helix 37	AE1	E	70	76	Right-handed 310
Helix 38	AE2	E	83	104	Right-handed alpha
Helix 39	AE3	E	142	153	Right-handed alpha
Helix 40	AE4	E	154	157	Right-handed 310
Helix 41	AE5	E	158	177	Right-handed alpha
Helix 42	AE6	E	189	200	Right-handed alpha
Helix 43	AE7	E	236	241	Right-handed alpha
Helix 44	AE8	E	259	265	Right-handed alpha
Helix 45	AE9	E	287	309	Right-handed alpha
Helix 46	AF1	E	323	333	Right-handed alpha
Helix 47	AF2	F	33	49	Right-handed alpha
Helix 48	AF3	F	51	69	Right-handed alpha
Helix 49	AF4	F	70	76	Right-handed 310
Helix 50	AF5	F	83	106	Right-handed alpha
Helix 51	AF6	F	121	125	Right-handed 310
Helix 52	AF7	F	142	153	Right-handed alpha
Helix 53	AF8	F	154	157	Right-handed 310
Helix 54	AF9	F	158	177	Right-handed alpha
Helix 55	AG1	F	189	199	Right-handed alpha
Helix 56	AG2	F	238	243	Right-handed alpha
Helix 57	AG3	F	287	309	Right-handed alpha
Helix 58	AG4	F	323	333	Right-handed alpha
Helix 59	AG5	F	358	362	Right-handed 310
Helix 60	AG6	G	33	49	Right-handed alpha
Helix 61	AG7	G	51	69	Right-handed alpha
Helix 62	AG8	G	70	76	Right-handed 310
Helix 63	AG9	G	83	106	Right-handed alpha
Helix 64	AH1	G	121	123	Right-handed 310
Helix 65	AH2	G	124	129	Right-handed alpha
Helix 66	AH3	G	142	153	Right-handed alpha
Helix 67	AH4	G	154	157	Right-handed 310
Helix 68	AH5	G	158	177	Right-handed alpha
Helix 69	AH6	G	189	199	Right-handed alpha
Helix 70	AH7	G	261	265	Right-handed 310
Helix 71	AH8	G	287	309	Right-handed alpha
Helix 72	AH9	G	323	333	Right-handed alpha
Helix 73	AI1	G	358	362	Right-handed 310

There are 13 sheets in PDB entry 9WQ3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	135	141	first strand
Strand 2	A	108	114	parallel
Strand 3	A	182	187	parallel
Strand 4	A	207	212	parallel
Strand 5	A	217	220	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	232	233	first strand
Strand 2	A	272	276	anti-parallel
Strand 3	A	247	253	parallel
Strand 4	A	314	320	parallel
Strand 5	A	342	346	parallel
Strand 6	A	351	356	anti-parallel
Strand 7	A	365	367	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	135	141	first strand
Strand 2	B	108	114	parallel
Strand 3	B	182	187	parallel
Strand 4	B	207	212	parallel
Strand 5	B	217	220	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	272	276	first strand
Strand 2	B	248	253	parallel
Strand 3	B	314	319	parallel
Strand 4	B	340	347	parallel
Strand 5	B	350	356	anti-parallel
Strand 6	B	364	367	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	135	141	first strand
Strand 2	D	108	114	parallel
Strand 3	D	182	184	parallel
Strand 4	D	207	211	parallel
Strand 5	D	218	220	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	232	233	first strand
Strand 2	D	272	276	anti-parallel
Strand 3	D	247	253	parallel
Strand 4	D	314	319	parallel
Strand 5	D	340	346	parallel
Strand 6	D	351	356	anti-parallel
Strand 7	D	365	367	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	135	141	first strand
Strand 2	E	108	114	parallel
Strand 3	E	182	187	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	209	212	first strand
Strand 2	E	217	220	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	232	233	first strand
Strand 2	E	272	276	anti-parallel
Strand 3	E	248	253	parallel
Strand 4	E	314	320	parallel
Strand 5	E	340	346	parallel
Strand 6	E	351	356	anti-parallel
Strand 7	E	364	367	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	135	138	first strand
Strand 2	F	108	114	parallel
Strand 3	F	182	187	parallel
Strand 4	F	207	212	parallel
Strand 5	F	217	220	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	272	276	first strand
Strand 2	F	247	253	parallel
Strand 3	F	314	320	parallel
Strand 4	F	340	346	parallel
Strand 5	F	351	356	anti-parallel
Strand 6	F	364	367	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	135	141	first strand
Strand 2	G	108	114	parallel
Strand 3	G	181	187	parallel
Strand 4	G	207	212	parallel
Strand 5	G	217	220	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	232	233	first strand
Strand 2	G	272	276	anti-parallel
Strand 3	G	247	253	parallel
Strand 4	G	314	319	parallel
Strand 5	G	340	346	parallel
Strand 6	G	351	356	anti-parallel
Strand 7	G	364	367	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9WQ3

Analysis of interatomic Contacts of Structural Units in PDB entry:
9WQ3