Analysis of interatomic Contacts of Structural Units in PDB entry:
9WQO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9WQO entry

There are 2 chains in PDB entry 9WQO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
X	SER 34	PRO 842
Y	SER 34	VAL 846

There are 53 helices in PDB entry 9WQO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	X	58	62	Right-handed 310
Helix 2	AA2	X	75	92	Right-handed alpha
Helix 3	AA3	X	111	124	Right-handed alpha
Helix 4	AA4	X	164	176	Right-handed alpha
Helix 5	AA5	X	177	179	Right-handed 310
Helix 6	AA6	X	189	194	Right-handed 310
Helix 7	AA7	X	207	222	Right-handed alpha
Helix 8	AA8	X	234	252	Right-handed alpha
Helix 9	AA9	X	266	280	Right-handed alpha
Helix 10	AB1	X	292	306	Right-handed alpha
Helix 11	AB2	X	323	328	Right-handed alpha
Helix 12	AB3	X	330	335	Right-handed alpha
Helix 13	AB4	X	347	355	Right-handed alpha
Helix 14	AB5	X	367	377	Right-handed alpha
Helix 15	AB6	X	409	432	Right-handed alpha
Helix 16	AB7	X	439	443	Right-handed 310
Helix 17	AB8	X	446	456	Right-handed alpha
Helix 18	AB9	X	590	617	Right-handed alpha
Helix 19	AC1	X	620	626	Right-handed alpha
Helix 20	AC2	X	627	650	Right-handed alpha
Helix 21	AC3	X	653	686	Right-handed alpha
Helix 22	AC4	X	703	728	Right-handed alpha
Helix 23	AC5	X	749	770	Right-handed alpha
Helix 24	AC6	X	772	777	Right-handed 310
Helix 25	AC7	X	786	807	Right-handed alpha
Helix 26	AC8	X	810	841	Right-handed alpha
Helix 27	AC9	Y	58	62	Right-handed 310
Helix 28	AD1	Y	75	92	Right-handed alpha
Helix 29	AD2	Y	111	124	Right-handed alpha
Helix 30	AD3	Y	164	176	Right-handed alpha
Helix 31	AD4	Y	177	179	Right-handed 310
Helix 32	AD5	Y	189	194	Right-handed 310
Helix 33	AD6	Y	207	222	Right-handed alpha
Helix 34	AD7	Y	234	251	Right-handed alpha
Helix 35	AD8	Y	266	279	Right-handed alpha
Helix 36	AD9	Y	292	307	Right-handed alpha
Helix 37	AE1	Y	323	328	Right-handed alpha
Helix 38	AE2	Y	330	335	Right-handed alpha
Helix 39	AE3	Y	347	356	Right-handed alpha
Helix 40	AE4	Y	367	377	Right-handed alpha
Helix 41	AE5	Y	409	432	Right-handed alpha
Helix 42	AE6	Y	439	443	Right-handed 310
Helix 43	AE7	Y	446	457	Right-handed alpha
Helix 44	AE8	Y	509	512	Right-handed 310
Helix 45	AE9	Y	590	617	Right-handed alpha
Helix 46	AF1	Y	620	626	Right-handed alpha
Helix 47	AF2	Y	627	649	Right-handed alpha
Helix 48	AF3	Y	653	686	Right-handed alpha
Helix 49	AF4	Y	702	728	Right-handed alpha
Helix 50	AF5	Y	749	770	Right-handed alpha
Helix 51	AF6	Y	782	807	Right-handed alpha
Helix 52	AF7	Y	810	839	Right-handed alpha
Helix 53	AF8	Y	841	845	Right-handed 310

There are 14 sheets in PDB entry 9WQO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	39	41	first strand
Strand 2	X	101	107	anti-parallel
Strand 3	X	45	51	parallel
Strand 4	X	156	160	parallel
Strand 5	X	182	184	parallel
Strand 6	X	201	203	parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	254	261	first strand
Strand 2	X	226	232	parallel
Strand 3	X	286	289	parallel
Strand 4	X	313	316	parallel
Strand 5	X	338	342	parallel
Strand 6	X	479	488	anti-parallel
Strand 7	X	491	501	anti-parallel
Strand 8	X	504	507	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	458	460	first strand
Strand 2	X	466	468	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	532	535	first strand
Strand 2	X	546	549	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	554	555	first strand
Strand 2	X	563	564	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	569	571	first strand
Strand 2	X	578	580	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	732	738	first strand
Strand 2	X	741	746	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	39	41	first strand
Strand 2	Y	101	107	anti-parallel
Strand 3	Y	45	51	parallel
Strand 4	Y	156	160	parallel
Strand 5	Y	182	184	parallel
Strand 6	Y	201	203	parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	254	261	first strand
Strand 2	Y	226	232	parallel
Strand 3	Y	286	289	parallel
Strand 4	Y	313	316	parallel
Strand 5	Y	338	342	parallel
Strand 6	Y	479	486	anti-parallel
Strand 7	Y	492	501	anti-parallel
Strand 8	Y	504	507	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	458	460	first strand
Strand 2	Y	466	468	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	532	535	first strand
Strand 2	Y	546	549	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	554	558	first strand
Strand 2	Y	561	564	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	570	571	first strand
Strand 2	Y	578	579	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	732	738	first strand
Strand 2	Y	741	746	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9WQO

Analysis of interatomic Contacts of Structural Units in PDB entry:
9WQO